[HTML][HTML] Bio. Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
E Talevich, BM Invergo, PJA Cock, BA Chapman - BMC bioinformatics, 2012 - Springer
Background Ongoing innovation in phylogenetics and evolutionary biology has been
accompanied by a proliferation of software tools, data formats, analytical techniques and web …
accompanied by a proliferation of software tools, data formats, analytical techniques and web …
Reconstructing phosphorylation signalling networks from quantitative phosphoproteomic data
BM Invergo, P Beltrao - Essays in Biochemistry, 2018 - portlandpress.com
Cascades of phosphorylation between protein kinases comprise a core mechanism in the
integration and propagation of intracellular signals. Although we have accumulated a wealth …
integration and propagation of intracellular signals. Although we have accumulated a wealth …
Persister Escherichia coli cells have a lower intracellular pH than susceptible cells but maintain their pH in response to antibiotic treatment
Persister and viable but non-culturable (VBNC) cells are two clonal subpopulations that can
survive multidrug exposure via a plethora of putative molecular mechanisms. Here, we …
survive multidrug exposure via a plethora of putative molecular mechanisms. Here, we …
Translating environmental gradients into discontinuous reaction norms via hormone signalling in a polyphenic butterfly
V Oostra, MA de Jong, BM Invergo… - … Royal Society B …, 2011 - royalsocietypublishing.org
Polyphenisms—the expression of discrete phenotypic morphs in response to environmental
variation—are examples of phenotypic plasticity that may potentially be adaptive in the face …
variation—are examples of phenotypic plasticity that may potentially be adaptive in the face …
Interpretation of the mouse electroretinogram
LH Pinto, B Invergo, K Shimomura… - Documenta …, 2007 - Springer
… Rod bipolar cells are the source of the b-wave in the dark-adapted retina [9–12]. The b-wave …
However, the b-wave is not the most sensitive to dim stimuli. Rather, the scotopic threshold …
However, the b-wave is not the most sensitive to dim stimuli. Rather, the scotopic threshold …
A demonstration of the intrinsic importance of stabilizing hydrophobic binding and non-convalent van der waals contacts dominant in the non-covalent CC-1065/B …
DL Boger, BJ Invergo, RS Coleman… - Chemico-biological …, 1990 - Elsevier
The comparative DNA binding properties and cytotoxic activity of CDPI n methyl esters (n = 1–5)
vs. PDE-I n methyl esters (n = 1–3) are detailed in studies which provide experimental …
vs. PDE-I n methyl esters (n = 1–3) are detailed in studies which provide experimental …
[HTML][HTML] Nutrient and salt depletion synergistically boosts glucose metabolism in individual Escherichia coli cells
G Glover, M Voliotis, U Łapińska, BM Invergo… - Communications …, 2022 - nature.com
… B over 1 min, 6–15% B over 58 min, 15–32%B over 58 min, 32–40%B over 5 min, 40–90%B
over 1 min, held at 90%B for 6 min and then reduced to 1%B over 1 min) with a flow rate of …
over 1 min, held at 90%B for 6 min and then reduced to 1%B over 1 min) with a flow rate of …
[PDF][PDF] Prediction of signed protein kinase regulatory circuits
… We found that, indeed, B-raf has specificity toward MAP2K1’s activating sites while MAPK3
is specific toward the inhibitory sites (Figure 3E). We then calculated a DCG on the signed …
is specific toward the inhibitory sites (Figure 3E). We then calculated a DCG on the signed …
[PDF][PDF] Sub-minute phosphoregulation of cell cycle systems during Plasmodium gamete formation
… proteins, 436 were annotated with at least one gene ontology (GO) term, which we used
to detect biological functions enriched within individual phosphosite clusters (Figure 2B; see …
to detect biological functions enriched within individual phosphosite clusters (Figure 2B; see …
Generation, identification and functional characterization of the nob4 mutation of Grm6 in the mouse
…, C Omura, S Lumayag, BM Invergo, B Glawe… - Visual …, 2007 - cambridge.org
We performed genome-wide chemical mutagenesis of C57BL/6J mice using N-ethyl-N-nitrosourea
(ENU). Electroretinographic screening of the third generation offspring revealed two …
(ENU). Electroretinographic screening of the third generation offspring revealed two …