Simultaneous epitope and transcriptome measurement in single cells

…, C Hafemeister, W Stephenson, B Houck-Loomis… - Nature …, 2017 - nature.com
High-throughput single-cell RNA sequencing has transformed our understanding of complex
cell populations, but it does not provide phenotypic information such as cell-surface protein …

[HTML][HTML] Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics

M Stoeckius, S Zheng, B Houck-Loomis, S Hao… - Genome biology, 2018 - Springer
b Representative scatter plot showing raw counts for HTO A and HTO B across all cell
barcodes. Both axes are clipped at 99.9% quantiles to exclude visual outliers. c Heatmap of …

Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring

…, GG Inghirami, V Adalsteinsson, B Houck-Loomis… - Nature medicine, 2020 - nature.com
b–d constitute a reanalysis of previously published data 18 . b, Histogram of samples
detected as a function of the maximum VAF in stage IV (left) and stage I (right) cancer. Maximum …

Resistance to TRK inhibition mediated by convergent MAPK pathway activation

…, RJ Nagy, RB Lanman, B Houck-Loomis… - Nature medicine, 2019 - nature.com
TRK fusions are found in a variety of cancer types, lead to oncogenic addiction, and strongly
predict tumor-agnostic efficacy of TRK inhibition 1 , 2 , 3 , 4 , 5 , 6 , 7 – 8 . With the recent …

Accelerated chromatin biochemistry using DNA-barcoded nucleosome libraries

…, MM Müller, B Fierz, Y David, B Houck-Loomis… - Nature …, 2014 - nature.com
Elucidating the molecular details of how chromatin-associated factors deposit, remove and
recognize histone post-translational modification (PTM) signatures remains a daunting task in …

An equilibrium-dependent retroviral mRNA switch regulates translational recoding

B Houck-Loomis, MA Durney, C Salguero, N Shankar… - Nature, 2011 - nature.com
Most retroviruses require translational recoding of a viral messenger RNA stop codon to
maintain a precise ratio of structural (Gag) and enzymatic (Pol) proteins during virus assembly 1 …

Effect of osimertinib and bevacizumab on progression-free survival for patients with metastatic EGFR-mutant lung cancers: a phase 1/2 single-group open-label trial

…, H Rizvi, D Tsui, C Falcon, B Houck-Loomis… - JAMA …, 2020 - jamanetwork.com
Importance The combination of erlotinib and bevacizumab as initial treatment of epidermal
growth factor receptor (EGFR[OMIM131550])–mutant lung cancers improves progression-free …

Comprehensive molecular and clinicopathologic analysis of 200 pulmonary invasive mucinous adenocarcinomas identifies distinct characteristics of molecular …

…, M Offin, C Falcon, D Brown, BR Houck-Loomis… - Clinical Cancer …, 2021 - AACR
Purpose: Invasive mucinous adenocarcinoma (IMA) is a unique subtype of lung adenocarcinoma,
characterized genomically by frequent KRAS mutations or specific gene fusions, most …

[HTML][HTML] Comprehensive molecular characterization of lung tumors implicates AKT and MYC signaling in adenocarcinoma to squamous cell transdifferentiation

…, JC Chang, N Rekhtman, B Houck-Loomis… - Journal of Hematology & …, 2021 - Springer
Background Lineage plasticity, the ability to transdifferentiate among distinct phenotypic
identities, facilitates therapeutic resistance in cancer. In lung adenocarcinomas (LUADs), this …

Noninvasive detection of polyclonal acquired resistance to FGFR inhibition in patients with cholangiocarcinoma harboring FGFR2 alterations

…, F Meng, SD Selcuklu, G Iyer, B Houck-Loomis… - JCO Precision …, 2021 - ascopubs.org
… (B) Development of FGFR2 acquired resistance mutations and re-emergence of FGFR2-…
(B) Clustering of acquired resistance fibroblast growth factor receptor (FGFR) 2 mutations in the …