User profiles for B. Haibe-Kains

Benjamin Haibe-Kains

Scientist (Principal Investigator), Princess Margaret Cancer Centre, University Health …
Verified email at uhnresearch.ca
Cited by 35620

Similarity network fusion for aggregating data types on a genomic scale

…, F Demir, M Fiume, Z Tu, M Brudno, B Haibe-Kains… - Nature …, 2014 - nature.com
… For each patient i, let a(i) denote the average dissimilarity to all other patients within the
same subtype and b(i) denote the lowest average dissimilarity to all other patients in different …

[HTML][HTML] Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach

…, J Bussink, R Monshouwer, B Haibe-Kains… - Nature …, 2014 - nature.com
… (b) Clinical patient parameters for showing significant association of the radiomic expression
patterns with primary tumour stage (T-stage; P<1 × 10 −20 , χ 2 test), overall stage (P=3.4 × …

Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis

…, P Farmer, V Praz, B Haibe-Kains… - Journal of the …, 2006 - academic.oup.com
B ) Analysis of patients with HG2 tumors by gene expression grade (GG). The 217 patients
with HG2 tumors were separated into low- and high-risk subsets by GG as GG1 ( green ) and …

[PDF][PDF] Proteogenomic characterization of pancreatic ductal adenocarcinoma

…, AS Mer, S Yoo, JM Wang, W Liu, B Haibe-Kains… - Cell, 2021 - cell.com
… for ischemia time to ensure high-quality PTM analysis of proteins (Figure 1B). Our patient …
were alive at the time of the data freeze for the analysis reported in this study (Figure 1B). …

[HTML][HTML] Reporting guidelines for human microbiome research: the STORMS checklist

…, C Furlanello, J Gilbert, E Grice, B Haibe-Kains… - Nature medicine, 2021 - nature.com
The particularly interdisciplinary nature of human microbiome research makes the organization
and reporting of results spanning epidemiology, biology, bioinformatics, translational …

Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series

…, S Loi, Y Wang, F Lallemand, B Haibe-Kains… - Clinical cancer …, 2007 - AACR
… risk alone (B) for TDM. The HRs are shown together with the 95% confidence interval. …
Desmedt, B. Haibe-Kains, and C. Sotiriou was supported by a national grant from the Fonds …

[HTML][HTML] Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures

…, P Farmer, S Pradervand, B Haibe-Kains… - Breast Cancer …, 2008 - Springer
… (b) Dot histograms showing dependence of proliferation score on the subtypes. The median
and quartiles for each group are shown by the box plot. ER - /ERBB2 - and HER2 + tumors …

[PDF][PDF] Definition of clinically distinct molecular subtypes in estrogen receptor-positive breast carcinomas through genomic grade

S Loi, B Haibe-Kains, C Desmedt… - Journal of clinical …, 2007 - researchgate.net
… Despite tracking a single biologic pathway, these were highly comparable to the previously
described luminal A and B classification and significantly correlated to the risk groups …

[HTML][HTML] Robust radiomics feature quantification using semiautomatic volumetric segmentation

…, S Mitra, BU Shankar, R Kikinis, B Haibe-Kains… - PloS one, 2014 - journals.plos.org
Due to advances in the acquisition and analysis of medical imaging, it is currently possible
to quantify the tumor phenotype. The emerging field of Radiomics addresses this issue by …

Biological processes associated with breast cancer clinical outcome depend on the molecular subtypes

C Desmedt, B Haibe-Kains, P Wirapati, M Buyse… - Clinical cancer …, 2008 - AACR
… This concurs with our findings that (a) proliferation seems to be the main contributor of these
signatures and (b) the ER+/HER2− subgroup is the only molecular subgroup that displays a …