User profiles for B. J. Clavijo

Bernardo J. Clavijo

Bioinformatic Algorithms Development
Verified email at illumina.com
Cited by 6061

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

Ancient hybridizations among the ancestral genomes of bread wheat

…, S Ayling, RH Ramirez-Gonzalez, BJ Clavijo… - science, 2014 - science.org
The allohexaploid bread wheat genome consists of three closely related subgenomes (A, B,
and D), but a clear understanding of their phylogenetic history has been lacking. We used …

KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies

…, G Kettleborough, J Wright, BJ Clavijo - …, 2017 - academic.oup.com
Motivation De novo assembly of whole genome shotgun (WGS) next-generation sequencing
(NGS) data benefits from high-quality input with high coverage. However, in practice, …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

BJ Clavijo, L Venturini, C Schudoma… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-quality
genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo… - …, 2017 - academic.oup.com
Common bread wheat, Triticum aestivum, has one of the most complex genomes known to
science, with 6 copies of each chromosome, enormous numbers of near-identical sequences …

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

RM Leggett, BJ Clavijo, L Clissold, MD Clark… - …, 2014 - academic.oup.com
Illumina’s recently released Nextera Long Mate Pair (LMP) kit enables production of jumping
libraries of up to 12 kb. The LMP libraries are an invaluable resource for carrying out …

Genome‐guided investigation of plant natural product biosynthesis

F Kellner, J Kim, BJ Clavijo, JP Hamilton… - The Plant …, 2015 - Wiley Online Library
The medicinal plant Madagascar periwinkle, C atharanthus roseus (L.) G. Don, produces
hundreds of biologically active monoterpene‐derived indole alkaloid ( MIA ) metabolites and is …

[HTML][HTML] Genome sequence and genetic diversity of European ash trees

…, DJ Studholme, J Zohren, DL Salmon, BJ Clavijo… - Nature, 2017 - nature.com
Ash trees (genus Fraxinus, family Oleaceae) are widespread throughout the Northern
Hemisphere, but are being devastated in Europe by the fungus Hymenoscyphus fraxineus, …

[HTML][HTML] The ash dieback invasion of Europe was founded by two genetically divergent individuals

…, M Rafiqi, G Kaithakottil, BJ Clavijo… - Nature Ecology & …, 2018 - nature.com
Accelerating international trade and climate change make pathogen spread an increasing
concern. Hymenoscyphus fraxineus, the causal agent of ash dieback, is a fungal pathogen …

A genome assembly of the barley 'transformation reference'cultivar golden promise

…, D Heavens, L Milne, BJ Clavijo… - G3: Genes …, 2020 - academic.oup.com
Barley (Hordeum vulgare) is one of the most important crops worldwide and is also considered
a research model for the large-genome small grain temperate cereals. Despite genomic …