User profiles for B. C. Collins

Ben Collins

Reader, School of Biological Sciences, Queen's University Belfast
Verified email at qub.ac.uk
Cited by 7359

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

…, G Rosenberger, S Amon, BC Collins… - Molecular systems …, 2018 - embopress.org
Many research questions in fields such as personalized medicine, drug screens or systems
biology depend on obtaining consistent and quantitatively accurate proteomics data from …

Quantitative proteomics: challenges and opportunities in basic and applied research

OT Schubert, HL Röst, BC Collins, G Rosenberger… - Nature protocols, 2017 - nature.com
In this Perspective, we discuss developments in mass-spectrometry-based proteomic
technology over the past decade from the viewpoint of our laboratory. We also reflect on existing …

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

…, CH Lee, EG Williams, T Sajic, BC Collins… - Molecular systems …, 2021 - embopress.org
Advancements in mass spectrometry‐based proteomics have enabled experiments encompassing
hundreds of samples. While these large sample sets deliver much‐needed statistical …

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

…, O Raether, N Bache, R Aebersold, BC Collins… - Nature …, 2020 - nature.com
Data-independent acquisition modes isolate and concurrently fragment populations of different
precursors by cycling through segments of a predefined precursor m/z range. Although …

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

…, OT Schubert, W Wolski, BC Collins… - Nature …, 2014 - nature.com
… Ben C Collins … Hannes L Röst, George Rosenberger, Pedro Navarro, Ludovic Gillet, Saša
M Miladinović, Olga T Schubert, Ben C Collins, Lars Malmström & Ruedi … Ben C Collins

[HTML][HTML] Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

BC Collins, CL Hunter, Y Liu, B Schilling… - Nature …, 2017 - nature.com
Quantitative proteomics employing mass spectrometry is an indispensable tool in life science
research. Targeted proteomics has emerged as a powerful approach for reproducible …

[HTML][HTML] A repository of assays to quantify 10,000 human proteins by SWATH-MS

…, CC Koh, T Guo, HL Röst, P Kouvonen, BC Collins… - Scientific data, 2014 - nature.com
Mass spectrometry is the method of choice for deep and reliable exploration of the (human)
proteome. Targeted mass spectrometry reliably detects and quantifies pre-determined sets of …

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

…, WE Wolski, HL Röst, G Rosenberger, BC Collins… - Nature medicine, 2015 - nature.com
Clinical specimens are each inherently unique, limited and nonrenewable. Small samples
such as tissue biopsies are often completely consumed after a limited number of analyses. …

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

BC Collins, LC Gillet, G Rosenberger, HL Röst… - Nature …, 2013 - nature.com
Protein complexes and protein interaction networks are essential mediators of most
biological functions. Complexes supporting transient functions such as signal transduction …

Quantitative variability of 342 plasma proteins in a human twin population

Y Liu, A Buil, BC Collins, LCJ Gillet… - Molecular systems …, 2015 - embopress.org
The degree and the origins of quantitative variability of most human plasma proteins are
largely unknown. Because the twin study design provides a natural opportunity to estimate the …