User profiles for B. C. Collins
Ben CollinsReader, School of Biological Sciences, Queen's University Belfast Verified email at qub.ac.uk Cited by 7359 |
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
…, G Rosenberger, S Amon, BC Collins… - Molecular systems …, 2018 - embopress.org
Many research questions in fields such as personalized medicine, drug screens or systems
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
biology depend on obtaining consistent and quantitatively accurate proteomics data from …
Quantitative proteomics: challenges and opportunities in basic and applied research
In this Perspective, we discuss developments in mass-spectrometry-based proteomic
technology over the past decade from the viewpoint of our laboratory. We also reflect on existing …
technology over the past decade from the viewpoint of our laboratory. We also reflect on existing …
Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial
Advancements in mass spectrometry‐based proteomics have enabled experiments encompassing
hundreds of samples. While these large sample sets deliver much‐needed statistical …
hundreds of samples. While these large sample sets deliver much‐needed statistical …
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition
Data-independent acquisition modes isolate and concurrently fragment populations of different
precursors by cycling through segments of a predefined precursor m/z range. Although …
precursors by cycling through segments of a predefined precursor m/z range. Although …
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
… Ben C Collins … Hannes L Röst, George Rosenberger, Pedro Navarro, Ludovic Gillet, Saša
M Miladinović, Olga T Schubert, Ben C Collins, Lars Malmström & Ruedi … Ben C Collins …
M Miladinović, Olga T Schubert, Ben C Collins, Lars Malmström & Ruedi … Ben C Collins …
[HTML][HTML] Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Quantitative proteomics employing mass spectrometry is an indispensable tool in life science
research. Targeted proteomics has emerged as a powerful approach for reproducible …
research. Targeted proteomics has emerged as a powerful approach for reproducible …
[HTML][HTML] A repository of assays to quantify 10,000 human proteins by SWATH-MS
Mass spectrometry is the method of choice for deep and reliable exploration of the (human)
proteome. Targeted mass spectrometry reliably detects and quantifies pre-determined sets of …
proteome. Targeted mass spectrometry reliably detects and quantifies pre-determined sets of …
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
Clinical specimens are each inherently unique, limited and nonrenewable. Small samples
such as tissue biopsies are often completely consumed after a limited number of analyses. …
such as tissue biopsies are often completely consumed after a limited number of analyses. …
Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system
Protein complexes and protein interaction networks are essential mediators of most
biological functions. Complexes supporting transient functions such as signal transduction …
biological functions. Complexes supporting transient functions such as signal transduction …
Quantitative variability of 342 plasma proteins in a human twin population
The degree and the origins of quantitative variability of most human plasma proteins are
largely unknown. Because the twin study design provides a natural opportunity to estimate the …
largely unknown. Because the twin study design provides a natural opportunity to estimate the …