[HTML][HTML] Dynamic integration of splicing within gene regulatory pathways
U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan species.
In addition to generating vast repertoires of RNAs and proteins, splicing has a profound …
In addition to generating vast repertoires of RNAs and proteins, splicing has a profound …
Genome-wide identification of zero nucleotide recursive splicing in Drosophila
…, X Wei, SC Garrett, A Osman, M Bolisetty, A Plocik… - Nature, 2015 - nature.com
Recursive splicing is a process in which large introns are removed in multiple steps by re-splicing
at ratchet points—5′ splice sites recreated after splicing 1 . Recursive splicing was …
at ratchet points—5′ splice sites recreated after splicing 1 . Recursive splicing was …
Reciprocal intronic and exonic histone modification regions in humans
JT Huff, AM Plocik, C Guthrie… - Nature structural & …, 2010 - nature.com
While much attention has been focused on chromatin at promoters and exons, human genes
are mostly composed of intronic sequences. Analyzing published surveys of nucleosomes …
are mostly composed of intronic sequences. Analyzing published surveys of nucleosomes …
Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower
…, A Heesacker, B Whitaker, C Taylor, A Plocik… - Molecular genetics and …, 2008 - Springer
Three-fourths of the recognition-dependent disease resistance genes (R-genes) identified
in plants encode nucleotide binding site (NBS) leucine-rich repeat (LRR) proteins. NBS-LRR …
in plants encode nucleotide binding site (NBS) leucine-rich repeat (LRR) proteins. NBS-LRR …
[HTML][HTML] Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques
…, MF Mckenzie-Bennett, K Robison, A Plocik… - Genome biology, 2022 - Springer
Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the
ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically …
ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically …
[HTML][HTML] Gene expression analysis of human induced pluripotent stem cell-derived neurons carrying copy number variants of chromosome 15q11-q13. 1
ND Germain, PF Chen, AM Plocik, H Glatt-Deeley… - Molecular Autism, 2014 - Springer
Background Duplications of the chromosome 15q11-q13.1 region are associated with an
estimated 1 to 3% of all autism cases, making this copy number variation (CNV) one of the …
estimated 1 to 3% of all autism cases, making this copy number variation (CNV) one of the …
A role for the CHC22 clathrin heavy-chain isoform in human glucose metabolism
Intracellular trafficking of the glucose transporter GLUT4 from storage compartments to the
plasma membrane is triggered in muscle and fat during the body’s response to insulin. …
plasma membrane is triggered in muscle and fat during the body’s response to insulin. …
[HTML][HTML] Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
…, M Imakaev, M Mckenzie-Bennett, K Robison, A Plocik… - medRxiv, 2021 - ncbi.nlm.nih.gov
Effectively monitoring the spread of SARS-CoV-2 variants is essential to efforts to counter
the ongoing pandemic. Wastewater monitoring of SARS-CoV-2 RNA has proven an effective …
the ongoing pandemic. Wastewater monitoring of SARS-CoV-2 RNA has proven an effective …
[HTML][HTML] COMT genetic variation confers risk for psychotic and affective disorders: a case control study
B Funke, AK Malhotra, CT Finn, AM Plocik… - Behavioral and Brain …, 2005 - Springer
Background Variation in the COMT gene has been implicated in a number of psychiatric
disorders, including psychotic, affective and anxiety disorders. The majority of these studies …
disorders, including psychotic, affective and anxiety disorders. The majority of these studies …
[PDF][PDF] Association of the DTNBP1 locus with schizophrenia in a US population
B Funke, CT Finn, AM Plocik, S Lake… - The American Journal of …, 2004 - cell.com
Linkage and association studies have recently implicated dystrobrevin-binding protein 1 (DTNBP1)
in the etiology of schizophrenia. We analyzed seven previously tested DTNBP1 …
in the etiology of schizophrenia. We analyzed seven previously tested DTNBP1 …