[HTML][HTML] Dynamic integration of splicing within gene regulatory pathways

U Braunschweig, S Gueroussov, AM Plocik… - Cell, 2013 - cell.com
Precursor mRNA splicing is one of the most highly regulated processes in metazoan species.
In addition to generating vast repertoires of RNAs and proteins, splicing has a profound …

Genome-wide identification of zero nucleotide recursive splicing in Drosophila

…, X Wei, SC Garrett, A Osman, M Bolisetty, A Plocik… - Nature, 2015 - nature.com
Recursive splicing is a process in which large introns are removed in multiple steps by re-splicing
at ratchet points—5′ splice sites recreated after splicing 1 . Recursive splicing was …

Reciprocal intronic and exonic histone modification regions in humans

JT Huff, AM Plocik, C Guthrie… - Nature structural & …, 2010 - nature.com
While much attention has been focused on chromatin at promoters and exons, human genes
are mostly composed of intronic sequences. Analyzing published surveys of nucleosomes …

Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower

…, A Heesacker, B Whitaker, C Taylor, A Plocik… - Molecular genetics and …, 2008 - Springer
Three-fourths of the recognition-dependent disease resistance genes (R-genes) identified
in plants encode nucleotide binding site (NBS) leucine-rich repeat (LRR) proteins. NBS-LRR …

[HTML][HTML] Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

…, MF Mckenzie-Bennett, K Robison, A Plocik… - Genome biology, 2022 - Springer
Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the
ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically …

[HTML][HTML] Gene expression analysis of human induced pluripotent stem cell-derived neurons carrying copy number variants of chromosome 15q11-q13. 1

ND Germain, PF Chen, AM Plocik, H Glatt-Deeley… - Molecular Autism, 2014 - Springer
Background Duplications of the chromosome 15q11-q13.1 region are associated with an
estimated 1 to 3% of all autism cases, making this copy number variation (CNV) one of the …

A role for the CHC22 clathrin heavy-chain isoform in human glucose metabolism

…, C Esk, S Hoshino, BH Funke, CY Chen, AM Plocik… - Science, 2009 - science.org
Intracellular trafficking of the glucose transporter GLUT4 from storage compartments to the
plasma membrane is triggered in muscle and fat during the body’s response to insulin. …

[HTML][HTML] Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

…, M Imakaev, M Mckenzie-Bennett, K Robison, A Plocik… - medRxiv, 2021 - ncbi.nlm.nih.gov
Effectively monitoring the spread of SARS-CoV-2 variants is essential to efforts to counter
the ongoing pandemic. Wastewater monitoring of SARS-CoV-2 RNA has proven an effective …

[HTML][HTML] COMT genetic variation confers risk for psychotic and affective disorders: a case control study

B Funke, AK Malhotra, CT Finn, AM Plocik… - Behavioral and Brain …, 2005 - Springer
Background Variation in the COMT gene has been implicated in a number of psychiatric
disorders, including psychotic, affective and anxiety disorders. The majority of these studies …

[PDF][PDF] Association of the DTNBP1 locus with schizophrenia in a US population

B Funke, CT Finn, AM Plocik, S Lake… - The American Journal of …, 2004 - cell.com
Linkage and association studies have recently implicated dystrobrevin-binding protein 1 (DTNBP1)
in the etiology of schizophrenia. We analyzed seven previously tested DTNBP1 …