User profiles for A. Naldi

Aurélien Naldi

Inria, France
Verified email at inria.fr
Cited by 4549

SBML Level 3: an extensible format for the exchange and reuse of biological models

…, SL Moodie, II Moraru, CJ Myers, A Naldi… - Molecular systems …, 2020 - embopress.org
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …

Optic nerve sheath diameter: present and future perspectives for neurologists and critical care physicians

P Lochner, M Czosnyka, A Naldi, E Lyros, P Pelosi… - Neurological …, 2019 - Springer
Background Estimation of intracranial pressure (ICP) may be helpful in the management of
neurological critically ill patients. It has been shown that ultrasonography of the optic nerve …

[HTML][HTML] Safety of COVID-19 vaccines: spotlight on neurological complications

G Tondo, E Virgilio, A Naldi, A Bianchi, C Comi - Life, 2022 - mdpi.com
The COVID-19 pandemic has led to unprecedented demand on the global healthcare system.
Remarkably, at the end of 2021, COVID-19 vaccines received approvals for human use in …

Detection and grading of endolymphatic hydrops in Menière disease using MR imaging

K Baráth, B Schuknecht, AM Naldi… - American Journal …, 2014 - Am Soc Neuroradiology
BACKGROUND AND PURPOSE: Endolymphatic hydrops has been recognized as the
underlying pathophysiology of Menière disease. We used 3T MR imaging to detect and grade …

Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle

A Fauré, A Naldi, C Chaouiya, D Thieffry - Bioinformatics, 2006 - academic.oup.com
Motivation: To understand the behaviour of complex biological regulatory networks, a proper
integration of molecular data into a full-fledge formal dynamical model is ultimately required…

[HTML][HTML] GOATOOLS: A Python library for Gene Ontology analyses

…, F Ramírez, A Warwick Vesztrocy, A Naldi… - Scientific reports, 2018 - nature.com
The biological interpretation of gene lists with interesting shared properties, such as up-or
down-regulation in a particular experiment, is typically accomplished using gene ontology …

Logical modelling of regulatory networks with GINsim 2.3

A Naldi, D Berenguier, A Fauré, F Lopez, D Thieffry… - Biosystems, 2009 - Elsevier
Many important problems in cell biology require the consideration of dense nonlinear
interactions between functional modules. The requirement of computer simulation for the …

COVID-19 pandemic-related anxiety, distress and burnout: prevalence and associated factors in healthcare workers of North-West Italy

A Naldi, F Vallelonga, A Di Liberto, R Cavallo… - BJPsych …, 2021 - cambridge.org
BackgroundThe COVID-19 pandemic caused drastic changes in healthcare and severe
social restrictions. Healthcare workers (HCWs) are on the front line against the virus and have …

[HTML][HTML] Diversity and plasticity of Th cell types predicted from regulatory network modelling

A Naldi, J Carneiro, C Chaouiya… - PLoS computational …, 2010 - journals.plos.org
Alternative cell differentiation pathways are believed to arise from the concerted action of
signalling pathways and transcriptional regulatory networks. However, the prediction of …

Logical modelling of gene regulatory networks with GINsim

C Chaouiya, A Naldi, D Thieffry - Bacterial Molecular Networks: Methods …, 2012 - Springer
Discrete mathematical formalisms are well adapted to model large biological networks, for
which detailed kinetic data are scarce. This chapter introduces the reader to a well-…