[HTML][HTML] SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data

JA Perea, A Deckard, SB Haase, J Harer - BMC bioinformatics, 2015 - Springer
Background Identifying periodically expressed genes across different processes (eg the cell
and metabolic cycles, circadian rhythms, etc) is a central problem in computational biology. …

Clinical practice guideline: Bell's palsy

…, R Burkholder, NA Deckard… - … –Head and Neck …, 2013 - journals.sagepub.com
Objective Bell’s palsy, named after the Scottish anatomist, Sir Charles Bell, is the most
common acute mono-neuropathy, or disorder affecting a single nerve, and is the most common …

Making democracy harder to hack

…, A Boustead, B Buchanan, ANC Deckard… - U. Mich. JL …, 2016 - HeinOnline
With the Russian government hack of the Democratic National Convention email servers
and related leaks, the drama of the 2016 US presidential race highlights an important point: …

In silico evolution of functional modules in biochemical networks

SR Paladugu, V Chickarmane, A Deckard… - IEE Proceedings-Systems …, 2006 - IET
Understanding the large reaction networks found in biological systems is a daunting task.
One approach is to divide a network into more manageable smaller modules, thus simplifying …

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data

A Deckard, RC Anafi, JB Hogenesch, SB Haase… - …, 2013 - academic.oup.com
Motivation: To discover and study periodic processes in biological systems, we sought to
identify periodic patterns in their gene expression data. We surveyed a large number of …

From Russia with love: Understanding the Russian cyber threat to US critical infrastructure and what to do about it

SJ Shackelford, M Sulmeyer, ANC Deckard… - Neb. L. Rev., 2017 - HeinOnline
In December 2016, the US Department of Homeland Security disclosed that malicious software
(malware) found on a computer system owned by a Vermont utility called the Burlington …

Association of COVID-19 quarantine duration and postquarantine transmission risk in 4 university cohorts

…, JT Platt, GT Nguyen, S Yune, A Deckard… - JAMA network …, 2022 - jamanetwork.com
Importance Optimal quarantine length for COVID-19 infection is unclear, in part owing to
limited empirical data. Objective To assess postquarantine transmission risk for various …

[HTML][HTML] The Local Edge Machine: inference of dynamic models of gene regulation

KA McGoff, X Guo, A Deckard, CM Kelliher, AR Leman… - Genome biology, 2016 - Springer
We present a novel approach, the Local Edge Machine, for the inference of regulatory
interactions directly from time-series gene expression data. We demonstrate its performance, …

Preliminary studies on the in silico evolution of biochemical networks

A Deckard, HM Sauro - ChemBioChem, 2004 - Wiley Online Library
Due to the variety and importance of roles performed by signalling networks, understanding
their function and evolution is of great interest. Signalling networks allow organisms to …

Hippocampal demyelination and memory dysfunction are associated with increased levels of the neuronal microRNA miR‐124 and reduced AMPA receptors

…, A Chang, MV Ribaudo, SA Deckard… - Annals of …, 2013 - Wiley Online Library
Objective Hippocampal demyelination, a common feature of postmortem multiple sclerosis (MS)
brains, reduces neuronal gene expression and is a likely contributor to the memory …