To the Editor: Analysis of raw reads from RNA sequencing (RNA-seq) makes it possible to
reconstruct complete gene structures, including multiple splice variants, without relying on …

… Data from the GEUVADIS study is available from the ArrayExpress database (www.ebi.ac.uk/arrayexpress)
under accession numbers E-GEUV-1 through E-GEUV-6. We specifically …

Background RNA sequencing is a flexible and powerful new approach for measuring gene,
exon, or isoform expression. To maximize the utility of RNA sequencing data, new statistical …

RNA-sequencing (RNA-seq) is a flexible technology for measuring genome-wide expression
that is rapidly replacing microarrays as costs become comparable. Current differential …

Differential expression analysis of RNA sequencing (RNA-seq) data typically relies on
reconstructing transcripts or counting reads that overlap known gene structures. We previously …

We have built a statistical package called Ballgown for estimating differential expression of
genes, transcripts, or exons from RNA sequencing experiments. Ballgown is designed to …

… The authors would like to thank Peter AC ’t Hoen and Tuuli Lappalainen for providing QC
data and assistance with contacting ArrayExpress. JTL, GP, and BL were partially supported by …

Background Differential expression analysis of RNA sequencing (RNA-seq) data typically
relies on reconstructing transcripts or counting reads that overlap known gene structures. …

To assess environmental health of a stream, field, or other ecological object, characteristics
of that object should be compared to a set of reference objects known to be healthy. Using …

This article describes the formation and initial outcomes of a research‐community collaborative
group that was developed based on community‐based participatory research principles. …