The complete sequence of a human genome

…, E Garrison, PGS Grady, TA Graves-Lindsay… - Science, 2022 - science.org
Since its initial release in 2000, the human reference genome has covered only the
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. …

[HTML][HTML] Telomere-to-telomere assembly of a complete human X chromosome

…, N Holmes, M Loose, U Surti, TA Graves Lindsay… - Nature, 2020 - nature.com
After two decades of improvements, the current human reference genome (GRCh38) is the
most accurate and complete vertebrate genome ever produced. However, no single …

[HTML][HTML] The structure, function and evolution of a complete human chromosome 8

…, AV Bzikadze, M Kremitzki, TA Graves-Lindsay… - Nature, 2021 - nature.com
The complete assembly of each human chromosome is essential for understanding human
biology and evolution 1 , 2 . Here we use complementary long-read sequencing …

[PDF][PDF] Characterizing the major structural variant alleles of the human genome

PA Audano, A Sulovari, TA Graves-Lindsay… - Cell, 2019 - cell.com
In order to provide a comprehensive resource for human structural variants (SVs), we generated
long-read sequence data and analyzed SVs for fifteen human genomes. We sequence …

[HTML][HTML] The Human Pangenome Project: a global resource to map genomic diversity

…, EP Garrison, NA Garrison, TA Graves-Lindsay… - Nature, 2022 - nature.com
The human reference genome is the most widely used resource in human genetics and is
due for a major update. Its current structure is a linear composite of merged haplotypes from …

Discovery and genotyping of structural variation from long-read haploid genome sequence data

…, K Hoekzema, D Gordon, TA Graves-Lindsay… - Genome …, 2017 - genome.cshlp.org
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid human …

High-resolution comparative analysis of great ape genomes

…, C Baker, RS Fulton, J Armstrong, TA Graves-Lindsay… - Science, 2018 - science.org
INTRODUCTION Understanding the genetic differences that make us human is a long-standing
endeavor that requires the comprehensive discovery and comparison of all forms of …

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

…, JA Walker, C Tomlinson, TA Graves-Lindsay… - Science, 2020 - science.org
INTRODUCTION The rhesus macaque (Macaca mulatta) is one of the most widely used
nonhuman primate (NHP) models for studying human biology and disease. As a representative …

Single haplotype assembly of the human genome from a hydatidiform mole

…, VA Schneider, TA Graves-Lindsay… - Genome …, 2014 - genome.cshlp.org
A complete reference assembly is essential for accurately interpreting individual genomes
and associating variation with phenotypes. While the current human reference genome …

[PDF][PDF] Familial long-read sequencing increases yield of de novo mutations

…, K Hoekzema, T Mantere, TA Graves-Lindsay… - The American Journal of …, 2022 - cell.com
Studies of de novo mutation (DNM) have typically excluded some of the most repetitive and
complex regions of the genome because these regions cannot be unambiguously mapped …