Cytoplasmic dynein moves through uncoordinated stepping of the AAA+ ring domains
Cytoplasmic dynein is a homodimeric AAA+ motor that transports a multitude of cargos
toward the microtubule minus end. How the two catalytic head domains interact and move …
toward the microtubule minus end. How the two catalytic head domains interact and move …
Actin-like cytoskeleton filaments contribute to cell mechanics in bacteria
…, H Arellano-Santoyo, PA Combs… - Proceedings of the …, 2010 - National Acad Sciences
A filamentous cytoskeleton largely governs the physical shape and mechanical properties
of eukaryotic cells. In bacteria, proteins homologous to all three classes of eukaryotic …
of eukaryotic cells. In bacteria, proteins homologous to all three classes of eukaryotic …
[HTML][HTML] Sequencing mRNA from Cryo-Sliced Drosophila Embryos to Determine Genome-Wide Spatial Patterns of Gene Expression
PA Combs, MB Eisen - PloS one, 2013 - journals.plos.org
Complex spatial and temporal patterns of gene expression underlie embryo differentiation,
yet methods do not yet exist for the efficient genome-wide determination of spatial expression …
yet methods do not yet exist for the efficient genome-wide determination of spatial expression …
[PDF][PDF] Tissue-specific cis-regulatory divergence implicates eloF in inhibiting interspecies mating in Drosophila
Reproductive isolation is a key component of speciation. In many insects, a major driver of
this isolation is cuticular hydrocarbon pheromones, which help to identify potential …
this isolation is cuticular hydrocarbon pheromones, which help to identify potential …
[HTML][HTML] Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster
PA Combs, MB Eisen - F1000Research, 2017 - ncbi.nlm.nih.gov
Patterning in the Drosophila melanogaster embryo is affected by multiple maternal factors, but
the effect of these factors on spatial gene expression has not been systematically analyzed…
the effect of these factors on spatial gene expression has not been systematically analyzed…
A New System for Comparative Functional Genomics of Saccharomyces Yeasts
Whole-genome sequencing, particularly in fungi, has progressed at a tremendous rate. More
difficult, however, is experimental testing of the inferences about gene function that can be …
difficult, however, is experimental testing of the inferences about gene function that can be …
[HTML][HTML] Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic
PA Combs, HB Fraser - PLoS Genetics, 2018 - journals.plos.org
Spatial patterning of gene expression is a key process in development, yet how it evolves is
still poorly understood. Both cis- and trans-acting changes could participate in complex …
still poorly understood. Both cis- and trans-acting changes could participate in complex …
[HTML][HTML] Low-cost, low-input RNA-seq protocols perform nearly as well as high-input protocols
PA Combs, MB Eisen - PeerJ, 2015 - peerj.com
Recently, a number of protocols extending RNA-sequencing to the single-cell regime have
been published. However, we were concerned that the additional steps to deal with such …
been published. However, we were concerned that the additional steps to deal with such …
[PDF][PDF] Measuring the bending stiffness of bacterial cells using an optical trap
S Wang, H Arellano-Santoyo, PA Combs… - Journal of visualized …, 2010 - academia.edu
We developed a protocol to measure the bending rigidity of filamentous rod-shaped bacteria.
Forces are applied with an optical trap, a microscopic three-dimensional spring made of …
Forces are applied with an optical trap, a microscopic three-dimensional spring made of …
Tissue-specific cis-regulatory divergence implicates a fatty acid elongase necessary for inhibiting interspecies mating in Drosophila
Pheromones known as cuticular hydrocarbons are a major component of reproductive isolation
in Drosophila. Individuals from morphologically similar sister species produce different …
in Drosophila. Individuals from morphologically similar sister species produce different …