[HTML][HTML] Single-cell transcriptomics in cancer immunobiology: the future of precision oncology
F Valdes-Mora, K Handler, AMK Law… - Frontiers in …, 2018 - frontiersin.org
Cancer is a heterogeneous and complex disease. Tumors are formed by cancer cells and a
myriad of non-cancerous cell types that together with the extracellular matrix form the tumor …
myriad of non-cancerous cell types that together with the extracellular matrix form the tumor …
[HTML][HTML] Active eosinophils regulate host defence and immune responses in colitis
In the past decade, single-cell transcriptomics has helped to uncover new cell types and
states and led to the construction of a cellular compendium of health and disease. Despite this …
states and led to the construction of a cellular compendium of health and disease. Despite this …
[HTML][HTML] Fragment-sequencing unveils local tissue microenvironments at single-cell resolution
K Handler, K Bach, C Borrelli, S Piscuoglio… - Nature …, 2023 - nature.com
Cells collectively determine biological functions by communicating with each other—both
through direct physical contact and secreted factors. Consequently, the local microenvironment …
through direct physical contact and secreted factors. Consequently, the local microenvironment …
A massively parallel reporter assay reveals focused and broadly encoded RNA localization signals in neurons
…, F Mhamedi, O David, SB Sain, K Handler… - Nucleic Acids …, 2022 - academic.oup.com
Asymmetric subcellular mRNA localization allows spatial regulation of gene expression and
functional compartmentalization. In neurons, localization of specific mRNAs to neurites is …
functional compartmentalization. In neurons, localization of specific mRNAs to neurites is …
[HTML][HTML] Differential regulation of β-catenin-mediated transcription via N-and C-terminal co-factors governs identity of murine intestinal epithelial stem cells
C Borrelli, T Valenta, K Handler, K Vélez… - Nature …, 2021 - nature.com
The homeostasis of the gut epithelium relies upon continuous renewal and proliferation of
crypt-resident intestinal epithelial stem cells (IESCs). Wnt/β-catenin signaling is required for …
crypt-resident intestinal epithelial stem cells (IESCs). Wnt/β-catenin signaling is required for …
Single-cell RNA sequencing unveils intestinal eosinophil development and specialization
…, NG Núñez, I Gonzalez-Perez, D Crepaz, K Handler… - bioRxiv, 2021 - biorxiv.org
Eosinophils are an integral part of the gastrointestinal (GI) immune system that contribute to
homeostatic and inflammatory processes. Here, we investigated the existence of functional …
homeostatic and inflammatory processes. Here, we investigated the existence of functional …
TiO2 nanoparticles abrogate the protective effect of the Crohn's disease-associated variation within the PTPN22 gene locus
M Schwarzfischer, A Niechcial, K Handler, Y Morsy… - Gut, 2023 - gut.bmj.com
Objective Inflammatory bowel disease (IBD) is a multifactorial condition driven by genetic
and environmental risk factors. A genetic variation in the protein tyrosine phosphatase non-…
and environmental risk factors. A genetic variation in the protein tyrosine phosphatase non-…
Sphere-sequencing unveils local tissue microenvironments at single cell resolution
The spatial organization of cells within tissues is tightly linked to their biological function. Yet,
methods to probe the entire transcriptome of multiple native tissue microenvironments at …
methods to probe the entire transcriptome of multiple native tissue microenvironments at …
Identifying Spatial Co-occurrence in Healthy and InflAmed tissues (ISCHIA)
…, K Bach, JA Kretz, K Handler… - Molecular Systems …, 2024 - embopress.org
Sequencing-based spatial transcriptomics (ST) methods allow unbiased capturing of RNA
molecules at barcoded spots, charting the distribution and localization of cell types and …
molecules at barcoded spots, charting the distribution and localization of cell types and …
Performance comparison of high throughput single-cell RNA-Seq platforms in complex tissues
…, LR de la Fuente, B Gloss, AMK Law, K Handler… - bioRxiv, 2023 - biorxiv.org
Single-cell transcriptomics has emerged as the preferred tool to define cell identity through
the analysis of gene expression signatures. However, there are limited studies that have …
the analysis of gene expression signatures. However, there are limited studies that have …