[HTML][HTML] Long-read genome sequencing identifies causal structural variation in a Mendelian disease
JD Merker, AM Wenger, T Sneddon, M Grove… - Genetics in …, 2018 - nature.com
Purpose Current clinical genomics assays primarily utilize short-read sequencing (SRS),
but SRS has limited ability to evaluate repetitive regions and structural variants. Long-read …
but SRS has limited ability to evaluate repetitive regions and structural variants. Long-read …
[HTML][HTML] The impact of rare variation on gene expression across tissues
Rare genetic variants are abundant in humans and are expected to contribute to individual
disease risk 1, 2, 3, 4. While genetic association studies have successfully identified common …
disease risk 1, 2, 3, 4. While genetic association studies have successfully identified common …
Circulating tumor DNA analysis in patients with cancer: American Society of Clinical Oncology and College of American Pathologists joint review
Purpose.— Clinical use of analytical tests to assess genomic variants in circulating tumor
DNA (ctDNA) is increasing. This joint review from the American Society of Clinical Oncology …
DNA (ctDNA) is increasing. This joint review from the American Society of Clinical Oncology …
Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts
…, JA Bernstein, EA Ashley, KM Boycott, JD Merker… - Nature medicine, 2019 - nature.com
It is estimated that 350 million individuals worldwide suffer from rare diseases, which are
predominantly caused by mutation in a single gene 1 . The current molecular diagnostic rate is …
predominantly caused by mutation in a single gene 1 . The current molecular diagnostic rate is …
[HTML][HTML] Next-generation sequencing of acute myeloid leukemia identifies the significance of TP53, U2AF1, ASXL1, and TET2 mutations
RS Ohgami, L Ma, JD Merker, JR Gotlib, I Schrijver… - Modern Pathology, 2015 - Elsevier
We assessed the frequency and clinicopathologic significance of 19 genes currently identified
as significantly mutated in myeloid neoplasms, RUNX1, ASXL1, TET2, CEBPA, IDH1, …
as significantly mutated in myeloid neoplasms, RUNX1, ASXL1, TET2, CEBPA, IDH1, …
[HTML][HTML] ESMO recommendations on the use of circulating tumour DNA assays for patients with cancer: a report from the ESMO Precision Medicine Working Group
…, M Diehn, A Italiano, J Lindberg, JD Merker… - Annals of …, 2022 - Elsevier
Circulating tumour DNA (ctDNA) assays conducted on plasma are rapidly developing a
strong evidence base for use in patients with cancer. The European Society for Medical …
strong evidence base for use in patients with cancer. The European Society for Medical …
Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing
SD Boyd, EL Marshall, JD Merker, JM Maniar… - Science translational …, 2009 - science.org
The complex repertoire of immune receptors generated by B and T cells enables recognition
of diverse threats to the host organism. Here, we show that massively parallel DNA …
of diverse threats to the host organism. Here, we show that massively parallel DNA …
Clinical interpretation and implications of whole-genome sequencing
…, BA Goldstein, JA Bernstein, H Chaib, JD Merker… - Jama, 2014 - jamanetwork.com
Importance Whole-genome sequencing (WGS) is increasingly applied in clinical medicine
and is expected to uncover clinically significant findings regardless of sequencing indication. …
and is expected to uncover clinically significant findings regardless of sequencing indication. …
Assuring the quality of next-generation sequencing in clinical laboratory practice
…, M Manion, TA Manolio, ER Mardis, JD Merker… - Nature …, 2012 - nature.com
We direct your readers' attention to the principles and guidelines (Supplementary Guidelines)
developed by the Next-generation Sequencing: Standardization of Clinical Testing (Nex-…
developed by the Next-generation Sequencing: Standardization of Clinical Testing (Nex-…
Novel mutations in the inhibitory adaptor protein LNK drive JAK-STAT signaling in patients with myeloproliferative neoplasms
…, Y Goltsev, KD Gibbs Jr, JD Merker… - Blood, The Journal …, 2010 - ashpublications.org
Dysregulated Janus kinase–signal transducer and activator of transcription (JAK-STAT)
signaling due to activation of tyrosine kinases is a common feature of myeloid malignancies. …
signaling due to activation of tyrosine kinases is a common feature of myeloid malignancies. …