User profiles for Jared O’Connell
Jared O'Connell23andMe Verified email at 23andme.com Cited by 10292 |
[HTML][HTML] The UK Biobank resource with deep phenotyping and genomic data
The UK Biobank project is a prospective cohort study with deep genetic and phenotypic
data collected on approximately 500,000 individuals from across the United Kingdom, aged …
data collected on approximately 500,000 individuals from across the United Kingdom, aged …
[HTML][HTML] Mapping the human genetic architecture of COVID-19
, … leaders O'Leary Kevin 133 Tuck Matthew 134 O'Brien … - Nature, 2021 - nature.com
The genetic make-up of an individual contributes to the susceptibility and response to viral
infection. Although environmental, clinical and social factors have a role in the chance of …
infection. Although environmental, clinical and social factors have a role in the chance of …
[PDF][PDF] The allelic landscape of human blood cell trait variation and links to common complex disease
…, JHA Martens, S Meacham, K Megy, J O'Connell… - Cell, 2016 - cell.com
Many common variants have been associated with hematological traits, but identification of
causal genes and pathways has proven challenging. We performed a genome-wide …
causal genes and pathways has proven challenging. We performed a genome-wide …
Genome-wide genetic data on~ 500,000 UK Biobank participants
The UK Biobank project is a large prospective cohort study of ~500,000 individuals from across
the United Kingdom, aged between 40-69 at recruitment. A rich variety of phenotypic and …
the United Kingdom, aged between 40-69 at recruitment. A rich variety of phenotypic and …
[HTML][HTML] A general approach for haplotype phasing across the full spectrum of relatedness
Many existing cohorts contain a range of relatedness between genotyped individuals, either
by design or by chance. Haplotype estimation in such cohorts is a central step in many …
by design or by chance. Haplotype estimation in such cohorts is a central step in many …
[HTML][HTML] Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in …
…, J O'Connell, E Frangou, O Delaneau… - The Lancet …, 2015 - thelancet.com
Background Understanding the genetic basis of airflow obstruction and smoking behaviour
is key to determining the pathophysiology of chronic obstructive pulmonary disease (COPD). …
is key to determining the pathophysiology of chronic obstructive pulmonary disease (COPD). …
A new method for multiancestry polygenic prediction improves performance across diverse populations
Polygenic risk scores (PRSs) increasingly predict complex traits; however, suboptimal
performance in non-European populations raise concerns about clinical applications and health …
performance in non-European populations raise concerns about clinical applications and health …
Haplotype estimation for biobank-scale data sets
The UK Biobank (UKB) has recently released genotypes on 152,328 individuals together
with extensive phenotypic and lifestyle information. We present a new phasing method, …
with extensive phenotypic and lifestyle information. We present a new phasing method, …
NxTrim: optimized trimming of Illumina mate pair reads
J O'Connell, O Schulz-Trieglaff, E Carlson… - …, 2015 - academic.oup.com
Motivation: Mate pair protocols add to the utility of paired-end sequencing by boosting the
genomic distance spanned by each pair of reads, potentially allowing larger repeats to be …
genomic distance spanned by each pair of reads, potentially allowing larger repeats to be …
Hidden semi markov models for multiple observation sequences: The mhsmm package for R
J O'Connell, S Højsgaard - Journal of Statistical Software, 2011 - jstatsoft.org
This paper describes the R package mhsmm which implements estimation and prediction
methods for hidden Markov and semi-Markov models for multiple observation sequences. …
methods for hidden Markov and semi-Markov models for multiple observation sequences. …