User profiles for James Staley

James R Staley

Computational Genetics Lead, UCB
Verified email at ucb.com
Cited by 7757

Microbial biogeography: putting microorganisms on the map

…, AL Reysenbach, VH Smith, JT Staley - Nature Reviews …, 2006 - nature.com
We review the biogeography of microorganisms in light of the biogeography of macroorganisms.
A large body of research supports the idea that free-living microbial taxa exhibit …

Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats

JT Staley, A Konopka - Annual review of microbiology, 1985 - annualreviews.org
STALEY & KONOPKA … STALEY & KONOPKA … In a study of a pulp mill oxidation pond
system used to reduce BOD of pulp wastes, Stanley & Staley (110) studied the utilization of …

Genomic atlas of the human plasma proteome

BB Sun, JC Maranville, JE Peters, D Stacey, JR Staley… - Nature, 2018 - nature.com
Although plasma proteins have important roles in biological processes and are the direct
targets of many drugs, the genetic factors that control inter-individual variation in plasma …

PhenoScanner V2: an expanded tool for searching human genotype–phenotype associations

…, S Burgess, J Danesh, AS Butterworth, JR Staley - …, 2019 - academic.oup.com
PhenoScanner is a curated database of publicly available results from large-scale genetic
association studies in humans. This online tool facilitates ‘phenome scans’, where genetic …

[BOOK][B] Bergey's Manual® of Systematic Bacteriology: Volume Two: The Proteobacteria (Part C)

DJ Brenner, NR Krieg, JT Staley, GM Garrity - 2005 - Springer
" Satisfyingly heavy and a pleasure to handle… Volume 2 of the Second Edition of this
highly respected work boasts a combined weight of more than 7 Kg. Their sheer size is a …

PhenoScanner: a database of human genotype–phenotype associations

JR Staley, J Blackshaw, MA Kamat, S Ellis… - …, 2016 - academic.oup.com
PhenoScanner is a curated database of publicly available results from large-scale genetic
association studies. This tool aims to facilitate ‘phenome scans’, the cross-referencing of …

[PDF][PDF] The allelic landscape of human blood cell trait variation and links to common complex disease

…, R Petersen, N Sharifi, SM Sheard, JR Staley… - Cell, 2016 - cell.com
Many common variants have been associated with hematological traits, but identification of
causal genes and pathways has proven challenging. We performed a genome-wide …

Prosthecomicrobium and Ancalomicrobium: New Prosthecate Freshwater Bacteria

JT Staley - Journal of bacteriology, 1968 - Am Soc Microbiol
Direct microscopic examination of natural freshwater samples reveals a variety of small
microorganisms having elaborate cellular appendages. Several strains have been isolated from …

Cycloclasticus pugetii gen. nov., sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium from Marine Sediments

…, RP Herwig, JC Lara, JT Staley - … of Systematic and …, 1995 - microbiologyresearch.org
Three heterotrophic bacterial strains were isolated from different locations in Puget Sound,
Washington, by using biphenyl as the principal carbon source. These strains grow by using a …

Association of LPA variants with risk of coronary disease and the implications for lipoprotein (a)-lowering therapies: a Mendelian randomization analysis

S Burgess, BA Ference, JR Staley, DF Freitag… - JAMA …, 2018 - jamanetwork.com
Importance Human genetic studies have indicated that plasma lipoprotein(a) (Lp[a]) is causally
associated with the risk of coronary heart disease (CHD), but randomized trials of several …