MiXCR: software for comprehensive adaptive immunity profiling
fy this observation, we extracted the maximum of the post-stimulus signal in the five most
responsive regions in both experiments. In 2P imaging, all regions displayed a substantial …
responsive regions in both experiments. In 2P imaging, all regions displayed a substantial …
Local fitness landscape of the green fluorescent protein
Fitness landscapes 1 , 2 depict how genotypes manifest at the phenotypic level and form the
basis of our understanding of many areas of biology 2 , 3 , 4 , 5 , 6 , 7 , yet their properties …
basis of our understanding of many areas of biology 2 , 3 , 4 , 5 , 6 , 7 , yet their properties …
[HTML][HTML] VDJtools: unifying post-analysis of T cell receptor repertoires
…, MA Turchaninova, DA Bolotin… - PLoS computational …, 2015 - journals.plos.org
Despite the growing number of immune repertoire sequencing studies, the field still lacks
software for analysis and comprehension of this high-dimensional data. Here we report …
software for analysis and comprehension of this high-dimensional data. Here we report …
Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling
…, DB Staroverov, DA Bolotin… - The Journal of …, 2014 - journals.aai.org
The decrease of TCR diversity with aging has never been studied by direct methods. In this
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
study, we combined high-throughput Illumina sequencing with unique cDNA molecular …
Towards error-free profiling of immune repertoires
…, IZ Mamedov, TR Tuganbaev, DA Bolotin… - Nature …, 2014 - nature.com
Deep profiling of antibody and T cell–receptor repertoires by means of high-throughput
sequencing has become an attractive approach for adaptive immunity studies, but its power is …
sequencing has become an attractive approach for adaptive immunity studies, but its power is …
Comparative analysis of murine T‐cell receptor repertoires
…, MY Zakharova, AN Davydov, DA Bolotin… - …, 2018 - Wiley Online Library
For understanding the rules and laws of adaptive immunity, high‐throughput profiling of T‐cell
receptor ( TCR ) repertoires becomes a powerful tool. The structure of TCR repertoires is …
receptor ( TCR ) repertoires becomes a powerful tool. The structure of TCR repertoires is …
Antigen receptor repertoire profiling from RNA-seq data
To the Editor: Somatic recombination and accumulation of mutations in VDJ segments result
in vast heterogeneity of T-cell receptor (TCR) and immunoglobulin repertoires1, 2. High-…
in vast heterogeneity of T-cell receptor (TCR) and immunoglobulin repertoires1, 2. High-…
[HTML][HTML] tcR: an R package for T cell receptor repertoire advanced data analysis
Background The Immunoglobulins (IG) and the T cell receptors (TR) play the key role in
antigen recognition during the adaptive immune response. Recent progress in next-generation …
antigen recognition during the adaptive immune response. Recent progress in next-generation …
Next generation sequencing for TCR repertoire profiling: platform‐specific features and correction algorithms
DA Bolotin, IZ Mamedov, OV Britanova… - European journal of …, 2012 - Wiley Online Library
The TCR repertoire is a mirror of the human immune system that reflects processes caused
by infections, cancer, autoimmunity, and aging. Next generation sequencing (NGS) is …
by infections, cancer, autoimmunity, and aging. Next generation sequencing (NGS) is …
High-throughput identification of antigen-specific TCRs by TCR gene capture
…, B Heemskerk, P Kvistborg, RJC Kluin, DA Bolotin… - Nature medicine, 2013 - nature.com
The transfer of T cell receptor (TCR) genes into patient T cells is a promising approach for
the treatment of both viral infections and cancer. Although efficient methods exist to identify …
the treatment of both viral infections and cancer. Although efficient methods exist to identify …