STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
Motivation Fusion genes created by genomic rearrangements can be potent drivers of
tumorigenesis. However, accurate identification of functionally fusion genes from genomic …
tumorigenesis. However, accurate identification of functionally fusion genes from genomic …
Peptidergic signaling in Calanus finmarchicus (Crustacea, Copepoda): in silico identification of putative peptide hormones and their receptors using a de novo …
The copepod Calanus finmarchicus is the most abundant zooplankton species in the North
Atlantic. While the life history of this crustacean is well studied, little is known about its …
Atlantic. While the life history of this crustacean is well studied, little is known about its …
Nonallelic gene conversion in the genus Drosophila
Nonallelic gene conversion has been proposed as a major force in homogenizing the sequences
of paralogous genes. In this work, we investigate the extent and characteristics of gene …
of paralogous genes. In this work, we investigate the extent and characteristics of gene …
Metagenomic analysis of the honey bee queen microbiome reveals low bacterial diversity and Caudoviricetes phages
In eusocial insects, the health of the queens—the colony founders and sole reproductive
females—is a primary determinant for colony success. Queen failure in the honey bee Apis …
females—is a primary determinant for colony success. Queen failure in the honey bee Apis …
The advanced cyberinfrastructure research and education facilitators virtual residency: Toward a national cyberinfrastructure workforce
H Neeman, A Bergstrom, D Brunson, C Ganote… - Proceedings of the …, 2016 - dl.acm.org
An Advanced Cyberinfrastructure Research and Education Facilitator (ACI-REF) works directly
with researchers to advance the computing- and data-intensive aspects of their research, …
with researchers to advance the computing- and data-intensive aspects of their research, …
A voice for bioinformatics
CL Ganote, SA Sanders, BN Papudeshi… - Proceedings of the …, 2017 - dl.acm.org
One of the challenges to adoption of HPC is the disjunction between those who need it and
those who know it. Biology (specifically, genomics) is a growing field for computational use, …
those who know it. Biology (specifically, genomics) is a growing field for computational use, …
National center for genome analysis support leverages XSEDE to support life science research
The National Center for Genome Analysis Support (NCGAS) is a response to the concern
that NSF-funded life scientists were underutilizing the national cyberinfrastructure, because …
that NSF-funded life scientists were underutilizing the national cyberinfrastructure, because …
Introducing CAFE: Computational analysis of (gene) family evolution
C Ganote, F Mendes, R Henschel, M Hahn, B Fulton - 2018 - scholarworks.iu.edu
dc. description. abstract Comparison of whole genomes has revealed large and frequent
changes in the size of gene families, the result of gene duplication and loss. Comparative …
changes in the size of gene families, the result of gene duplication and loss. Comparative …
Galaxy based BLAST submission to distributed national high throughput computing resources
To assist the bioinformatic community in leveraging the national cyberinfrastructure, the
National Center for Genomic Analysis Support (NCGAS) along with Indiana University's High …
National Center for Genomic Analysis Support (NCGAS) along with Indiana University's High …
Summary of the National Center for Genome Analysis Support (NCGAS) 2018-2019 de Novo Transcriptome Workflow and Workshops
S Sanders, T Doak, C Ganote, B Papudeshi, C Stewart - 2019 - scholarworks.iu.edu
The National Center for Genome Analysis Support (NCGAS) has held a workshop entitled "de
novo Assembly of Transcriptomes using HPC Resources" three times between April 2018 …
novo Assembly of Transcriptomes using HPC Resources" three times between April 2018 …