User profiles for Alexander E. Lipka

Alexander E. Lipka

Associate Professor of Biometry, University of Illinois
Verified email at illinois.edu
Cited by 7542

GAPIT: genome association and prediction integrated tool

AE Lipka, F Tian, Q Wang, J Peiffer, M Li… - …, 2012 - academic.oup.com
Software programs that conduct genome-wide association studies and genomic prediction
and selection need to use methodologies that maximize statistical power, provide high …

[HTML][HTML] Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol

F Lu, AE Lipka, J Glaubitz, R Elshire, JH Cherney… - PLoS …, 2013 - journals.plos.org
Switchgrass (Panicum virgatum L.) is a perennial grass that has been designated as an
herbaceous model biofuel crop for the United States of America. To facilitate accelerated …

GAPIT version 2: an enhanced integrated tool for genomic association and prediction

…, F Tian, Z Su, Y Pan, D Liu, AE Lipka… - The plant …, 2016 - Wiley Online Library
Most human diseases and agriculturally important traits are complex. Dissecting their genetic
architecture requires continued development of innovative and powerful statistical methods…

Natural variation in maize aphid resistance is associated with 2, 4-dihydroxy-7-methoxy-1, 4-benzoxazin-3-one glucoside methyltransferase activity

…, H Barbier, H Kaur, MM Haribal, AE Lipka… - The Plant …, 2013 - academic.oup.com
Plants differ greatly in their susceptibility to insect herbivory, suggesting both local adaptation
and resistance tradeoffs. We used maize (Zea mays) recombinant inbred lines to map a …

A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels

BF Owens, AE Lipka, M Magallanes-Lundback… - Genetics, 2014 - academic.oup.com
Efforts are underway for development of crops with improved levels of provitamin A carotenoids
to help combat dietary vitamin A deficiency. As a global staple crop with considerable …

[PDF][PDF] Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

…, TR Gingeras, RJ Schmitz, D Ware, AE Lipka… - Developmental Cell, 2021 - cell.com
Crop productivity depends on activity of meristems that produce optimized plant architectures,
including that of the maize ear. A comprehensive understanding of development requires …

Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain

AE Lipka, MA Gore… - G3: Genes …, 2013 - academic.oup.com
Tocopherols and tocotrienols, collectively known as tocochromanols, are the major lipid-soluble
antioxidants in maize (Zea mays L.) grain. Given that individual tocochromanols differ in …

CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of β-Carotene Content in Arabidopsis Seeds

…, LU Gilliland, A Zhou, AE Lipka… - The Plant …, 2013 - academic.oup.com
Experimental approaches targeting carotenoid biosynthetic enzymes have successfully
increased the seed β-carotene content of crops. However, linkage analysis of seed carotenoids …

From association to prediction: statistical methods for the dissection and selection of complex traits in plants

AE Lipka, CB Kandianis, ME Hudson, J Yu… - Current Opinion in Plant …, 2015 - Elsevier
… Author links open overlay panel Alexander E Lipka 1 , Catherine B Kandianis 2 3 , Matthew
E Hudson 1 , Jianming Yu 4 , Jenny Drnevich 5 , Peter J Bradbury 6 , Michael A Gore 3 …

Genomic Selection for Predicting Fusarium Head Blight Resistance in a Wheat Breeding Program

MP Arruda, PJ Brown, AE Lipka, AM Krill… - The Plant …, 2015 - Wiley Online Library
Genomic selection (GS) is a breeding method that uses marker–trait models to predict
unobserved phenotypes. This study developed GS models for predicting traits associated with …