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G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions.
Esnault C, Magat T, Zine El Aabidine A, Garcia-Oliver E, Cucchiarini A, Bouchouika S, Lleres D, Goerke L, Luo Y, Verga D, Lacroix L, Feil R, Spicuglia S, Mergny JL, Andrau JC. Esnault C, et al. Among authors: zine el aabidine a. Nat Genet. 2023 Aug;55(8):1359-1369. doi: 10.1038/s41588-023-01437-4. Epub 2023 Jul 3. Nat Genet. 2023. PMID: 37400615 Free article.
The control of transcriptional memory by stable mitotic bookmarking.
Bellec M, Dufourt J, Hunt G, Lenden-Hasse H, Trullo A, Zine El Aabidine A, Lamarque M, Gaskill MM, Faure-Gautron H, Mannervik M, Harrison MM, Andrau JC, Favard C, Radulescu O, Lagha M. Bellec M, et al. Among authors: zine el aabidine a. Nat Commun. 2022 Mar 4;13(1):1176. doi: 10.1038/s41467-022-28855-y. Nat Commun. 2022. PMID: 35246556 Free PMC article.
Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers.
Bejjani F, Tolza C, Boulanger M, Downes D, Romero R, Maqbool MA, Zine El Aabidine A, Andrau JC, Lebre S, Brehelin L, Parrinello H, Rohmer M, Kaoma T, Vallar L, Hughes JR, Zibara K, Lecellier CH, Piechaczyk M, Jariel-Encontre I. Bejjani F, et al. Among authors: zine el aabidine a. Nucleic Acids Res. 2021 Mar 18;49(5):2488-2508. doi: 10.1093/nar/gkab053. Nucleic Acids Res. 2021. PMID: 33533919 Free PMC article.
The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection.
Sultana T, van Essen D, Siol O, Bailly-Bechet M, Philippe C, Zine El Aabidine A, Pioger L, Nigumann P, Saccani S, Andrau JC, Gilbert N, Cristofari G. Sultana T, et al. Among authors: zine el aabidine a. Mol Cell. 2019 May 2;74(3):555-570.e7. doi: 10.1016/j.molcel.2019.02.036. Epub 2019 Apr 4. Mol Cell. 2019. PMID: 30956044 Free article.
Critical role for TRIM28 and HP1β/γ in the epigenetic control of T cell metabolic reprograming and effector differentiation.
Gehrmann U, Burbage M, Zueva E, Goudot C, Esnault C, Ye M, Carpier JM, Burgdorf N, Hoyler T, Suarez G, Joannas L, Heurtebise-Chrétien S, Durand S, Panes R, Bellemare-Pelletier A, Sáez PJ, Aprahamian F, Lefevre D, Adoue V, Zine El Aabidine A, Muhammad Ahmad M, Hivroz C, Joffre O, Cammas F, Kroemer G, Gagnon E, Andrau JC, Amigorena S. Gehrmann U, et al. Among authors: zine el aabidine a. Proc Natl Acad Sci U S A. 2019 Dec 17;116(51):25839-25849. doi: 10.1073/pnas.1901639116. Epub 2019 Nov 27. Proc Natl Acad Sci U S A. 2019. PMID: 31776254 Free PMC article.
Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.
Le Bras Y, Collin O, Monjeaud C, Lacroix V, Rivals É, Lemaitre C, Miele V, Sacomoto G, Marchet C, Cazaux B, Zine El Aabidine A, Salmela L, Alves-Carvalho S, Andrieux A, Uricaru R, Peterlongo P. Le Bras Y, et al. Among authors: zine el aabidine a. Gigascience. 2016 Feb 11;5:9. doi: 10.1186/s13742-015-0105-2. eCollection 2016. Gigascience. 2016. PMID: 26870323 Free PMC article.