Zielinski DC[au] - Search Results

Year	Number of Results
2009	1
2010	1
2011	1
2012	1
2014	2
2015	3
2016	4
2017	4
2018	6
2020	2
2021	3
2023	5
2024	2

1

Estimating Metabolic Equilibrium Constants: Progress and Future Challenges.

Du B, Zielinski DC, Palsson BO. Du B, et al. Among authors: zielinski dc. Trends Biochem Sci. 2018 Dec;43(12):960-969. doi: 10.1016/j.tibs.2018.09.009. Epub 2018 Oct 24. Trends Biochem Sci. 2018. PMID: 30472988 Review.

2

The Expanding Computational Toolbox for Engineering Microbial Phenotypes at the Genome Scale.

Zielinski DC, Patel A, Palsson BO. Zielinski DC, et al. Microorganisms. 2020 Dec 21;8(12):2050. doi: 10.3390/microorganisms8122050. Microorganisms. 2020. PMID: 33371386 Free PMC article. Review.

3

Differential Expression Analysis Utilizing Condition-Specific Metabolic Pathways.

Mattei G, Gan Z, Ramazzotti M, Palsson BO, Zielinski DC. Mattei G, et al. Among authors: zielinski dc. Metabolites. 2023 Nov 3;13(11):1127. doi: 10.3390/metabo13111127. Metabolites. 2023. PMID: 37999223 Free PMC article.

4

The quantitative metabolome is shaped by abiotic constraints.

Akbari A, Yurkovich JT, Zielinski DC, Palsson BO. Akbari A, et al. Among authors: zielinski dc. Nat Commun. 2021 May 26;12(1):3178. doi: 10.1038/s41467-021-23214-9. Nat Commun. 2021. PMID: 34039963 Free PMC article.

5

Empowering drug off-target discovery with metabolic and structural analysis.

Chowdhury S, Zielinski DC, Dalldorf C, Rodrigues JV, Palsson BO, Shakhnovich EI. Chowdhury S, et al. Among authors: zielinski dc. Nat Commun. 2023 Jun 9;14(1):3390. doi: 10.1038/s41467-023-38859-x. Nat Commun. 2023. PMID: 37296102 Free PMC article.

6

A multi-scale expression and regulation knowledge base for Escherichia coli.

Lamoureux CR, Decker KT, Sastry AV, Rychel K, Gao Y, McConn JL, Zielinski DC, Palsson BO. Lamoureux CR, et al. Among authors: zielinski dc. Nucleic Acids Res. 2023 Oct 27;51(19):10176-10193. doi: 10.1093/nar/gkad750. Nucleic Acids Res. 2023. PMID: 37713610 Free PMC article.

7

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions.

Dalldorf C, Rychel K, Szubin R, Hefner Y, Patel A, Zielinski DC, Palsson BO. Dalldorf C, et al. Among authors: zielinski dc. Res Sq [Preprint]. 2023 Apr 12:rs.3.rs-2729651. doi: 10.21203/rs.3.rs-2729651/v1. Res Sq. 2023. PMID: 37090546 Free PMC article. Preprint.

8

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data.

Phaneuf PV, Zielinski DC, Yurkovich JT, Johnsen J, Szubin R, Yang L, Kim SH, Schulz S, Wu M, Dalldorf C, Ozdemir E, Lennen RM, Palsson BO, Feist AM. Phaneuf PV, et al. Among authors: zielinski dc. ACS Synth Biol. 2021 Dec 17;10(12):3379-3395. doi: 10.1021/acssynbio.1c00337. Epub 2021 Nov 11. ACS Synth Biol. 2021. PMID: 34762392 Free PMC article.

9

Recon3D enables a three-dimensional view of gene variation in human metabolism.

Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlić A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO. Brunk E, et al. Among authors: zielinski dc. Nat Biotechnol. 2018 Mar;36(3):272-281. doi: 10.1038/nbt.4072. Epub 2018 Feb 19. Nat Biotechnol. 2018. PMID: 29457794 Free PMC article.

10

Temperature-Dependent Estimation of Gibbs Energies Using an Updated Group-Contribution Method.

Du B, Zhang Z, Grubner S, Yurkovich JT, Palsson BO, Zielinski DC. Du B, et al. Among authors: zielinski dc. Biophys J. 2018 Jun 5;114(11):2691-2702. doi: 10.1016/j.bpj.2018.04.030. Biophys J. 2018. PMID: 29874618 Free PMC article.

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