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The C-SHIFT Algorithm for Normalizing Covariances.
Chunikhina E, Logan P, Kovchegov Y, Yambartsev A, Mondal D, Morgun A. Chunikhina E, et al. Among authors: yambartsev a. IEEE/ACM Trans Comput Biol Bioinform. 2023 Jan-Feb;20(1):720-730. doi: 10.1109/TCBB.2022.3151840. Epub 2023 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 35167480
Unexpected links reflect the noise in networks.
Yambartsev A, Perlin MA, Kovchegov Y, Shulzhenko N, Mine KL, Dong X, Morgun A. Yambartsev A, et al. Biol Direct. 2016 Oct 13;11(1):52. doi: 10.1186/s13062-016-0155-0. Biol Direct. 2016. PMID: 27737689 Free PMC article.
Gene network reconstruction reveals cell cycle and antiviral genes as major drivers of cervical cancer.
Mine KL, Shulzhenko N, Yambartsev A, Rochman M, Sanson GF, Lando M, Varma S, Skinner J, Volfovsky N, Deng T, Brenna SM, Carvalho CR, Ribalta JC, Bustin M, Matzinger P, Silva ID, Lyng H, Gerbase-DeLima M, Morgun A. Mine KL, et al. Among authors: yambartsev a. Nat Commun. 2013;4:1806. doi: 10.1038/ncomms2693. Nat Commun. 2013. PMID: 23651994 Free PMC article.