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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1995 1
1997 1
1998 1
1999 2
2000 1
2001 3
2002 3
2003 1
2004 3
2005 2
2006 3
2008 2
2009 2
2010 4
2011 8
2012 8
2013 2
2014 11
2015 12
2016 8
2017 4
2018 10
2019 6
2020 6
2021 12
2022 8
2023 11
2024 0

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130 results

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Page 1
Towards complete and error-free genome assemblies of all vertebrate species.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW 3rd, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B, Johnso… See abstract for full author list ➔ Rhie A, et al. Among authors: warnow t. Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28. Nature. 2021. PMID: 33911273 Free PMC article.
PASTA for proteins.
Collins K, Warnow T. Collins K, et al. Among authors: warnow t. Bioinformatics. 2018 Nov 15;34(22):3939-3941. doi: 10.1093/bioinformatics/bty495. Bioinformatics. 2018. PMID: 29931282 Free PMC article.
Why sequence all eukaryotes?
Blaxter M, Archibald JM, Childers AK, Coddington JA, Crandall KA, Di Palma F, Durbin R, Edwards SV, Graves JAM, Hackett KJ, Hall N, Jarvis ED, Johnson RN, Karlsson EK, Kress WJ, Kuraku S, Lawniczak MKN, Lindblad-Toh K, Lopez JV, Moran NA, Robinson GE, Ryder OA, Shapiro B, Soltis PS, Warnow T, Zhang G, Lewin HA. Blaxter M, et al. Among authors: warnow t. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2115636118. doi: 10.1073/pnas.2115636118. Proc Natl Acad Sci U S A. 2022. PMID: 35042801 Free PMC article.
Recent progress on methods for estimating and updating large phylogenies.
Zaharias P, Warnow T. Zaharias P, et al. Among authors: warnow t. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210244. doi: 10.1098/rstb.2021.0244. Epub 2022 Aug 22. Philos Trans R Soc Lond B Biol Sci. 2022. PMID: 35989607 Free PMC article. Review.
Phylogenomic branch length estimation using quartets.
Tabatabaee Y, Zhang C, Warnow T, Mirarab S. Tabatabaee Y, et al. Among authors: warnow t. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i185-i193. doi: 10.1093/bioinformatics/btad221. Bioinformatics. 2023. PMID: 37387151 Free PMC article.
FASTRAL: improving scalability of phylogenomic analysis.
Dibaeinia P, Tabe-Bordbar S, Warnow T. Dibaeinia P, et al. Among authors: warnow t. Bioinformatics. 2021 Aug 25;37(16):2317-2324. doi: 10.1093/bioinformatics/btab093. Bioinformatics. 2021. PMID: 33576396 Free PMC article.
Data access for the 1,000 Plants (1KP) project.
Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, Roure B, Philippe H, Ruhfel BR, Miles NW, Graham SW, Mathews S, Surek B, Melkonian M, Soltis DE, Soltis PS, Rothfels C, Pokorny L, Shaw JA, DeGironimo L, Stevenson DW, Villarreal JC, Chen T, Kutchan TM, Rolf M, Baucom RS, Deyholos MK, Samudrala R, Tian Z, Wu X, Sun X, Zhang Y, Wang J, Leebens-Mack J, Wong GK. Matasci N, et al. Among authors: warnow t. Gigascience. 2014 Oct 27;3:17. doi: 10.1186/2047-217X-3-17. eCollection 2014. Gigascience. 2014. PMID: 25625010 Free PMC article. Review.
MAGUS: Multiple sequence Alignment using Graph clUStering.
Smirnov V, Warnow T. Smirnov V, et al. Among authors: warnow t. Bioinformatics. 2021 Jul 19;37(12):1666-1672. doi: 10.1093/bioinformatics/btaa992. Bioinformatics. 2021. PMID: 33252662 Free PMC article.
130 results