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Non-parametric correction of estimated gene trees using TRACTION.
Christensen S, Molloy EK, Vachaspati P, Yammanuru A, Warnow T. Christensen S, et al. Among authors: vachaspati p. Algorithms Mol Biol. 2020 Jan 4;15:1. doi: 10.1186/s13015-019-0161-8. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 31911812 Free PMC article.
Phylogenomics from Whole Genome Sequences Using aTRAM.
Allen JM, Boyd B, Nguyen NP, Vachaspati P, Warnow T, Huang DI, Grady PGS, Bell KC, Cronk QCB, Mugisha L, Pittendrigh BR, Leonardi MS, Reed DL, Johnson KP. Allen JM, et al. Among authors: vachaspati p. Syst Biol. 2017 Sep 1;66(5):786-798. doi: 10.1093/sysbio/syw105. Syst Biol. 2017. PMID: 28123117
Diarylthiazole: an antimycobacterial scaffold potentially targeting PrrB-PrrA two-component system.
Bellale E, Naik M, V B V, Ambady A, Narayan A, Ravishankar S, Ramachandran V, Kaur P, McLaughlin R, Whiteaker J, Morayya S, Guptha S, Sharma S, Raichurkar A, Awasthy D, Achar V, Vachaspati P, Bandodkar B, Panda M, Chatterji M. Bellale E, et al. Among authors: vachaspati p. J Med Chem. 2014 Aug 14;57(15):6572-82. doi: 10.1021/jm500833f. Epub 2014 Jul 16. J Med Chem. 2014. PMID: 24967731
ASTRID: Accurate Species TRees from Internode Distances.
Vachaspati P, Warnow T. Vachaspati P, et al. BMC Genomics. 2015;16 Suppl 10(Suppl 10):S3. doi: 10.1186/1471-2164-16-S10-S3. Epub 2015 Oct 2. BMC Genomics. 2015. PMID: 26449326 Free PMC article.
Nitroarenes as Antitubercular Agents: Stereoelectronic Modulation to Mitigate Mutagenicity.
Landge S, Ramachandran V, Kumar A, Neres J, Murugan K, Sadler C, Fellows MD, Humnabadkar V, Vachaspati P, Raichurkar A, Sharma S, Ravishankar S, Guptha S, Sambandamurthy VK, Balganesh TS, Ugarkar BG, Balasubramanian V, Bandodkar BS, Panda M. Landge S, et al. Among authors: vachaspati p. ChemMedChem. 2016 Feb 4;11(3):331-9. doi: 10.1002/cmdc.201500462. Epub 2016 Jan 11. ChemMedChem. 2016. PMID: 26751718
17 results