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Page 1
BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts.
PLoS Comput Biol. 2022 Apr 20;18(4):e1009987. doi: 10.1371/journal.pcbi.1009987. eCollection 2022 Apr.
PLoS Comput Biol. 2022.
PMID: 35442944
Free PMC article.
A linear programming-based strategy to save pipette tips in automated DNA assembly.
Sechkar K, Tuza ZA, Stan GB.
Sechkar K, et al. Among authors: tuza za.
Synth Biol (Oxf). 2022 Apr 11;7(1):ysac004. doi: 10.1093/synbio/ysac004. eCollection 2022.
Synth Biol (Oxf). 2022.
PMID: 35540864
Free PMC article.
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A MATLAB toolbox for modeling genetic circuits in cell-free systems.
Singhal V, Tuza ZA, Sun ZZ, Murray RM.
Singhal V, et al. Among authors: tuza za.
Synth Biol (Oxf). 2021 Feb 5;6(1):ysab007. doi: 10.1093/synbio/ysab007. eCollection 2021.
Synth Biol (Oxf). 2021.
PMID: 33981862
Free PMC article.
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Tools for engineering coordinated system behaviour in synthetic microbial consortia.
Kylilis N, Tuza ZA, Stan GB, Polizzi KM.
Kylilis N, et al. Among authors: tuza za.
Nat Commun. 2018 Jul 11;9(1):2677. doi: 10.1038/s41467-018-05046-2.
Nat Commun. 2018.
PMID: 29992956
Free PMC article.
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A resource dependent protein synthesis model for evaluating synthetic circuits.
Halter W, Montenbruck JM, Tuza ZA, Allgöwer F.
Halter W, et al. Among authors: tuza za.
J Theor Biol. 2017 May 7;420:267-278. doi: 10.1016/j.jtbi.2017.03.004. Epub 2017 Mar 9.
J Theor Biol. 2017.
PMID: 28286216
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Erratum to: A MATLAB toolbox for modeling genetic circuits in cell-free systems.
Singhal V, Tuza ZA, Sun ZZ, Murray RM.
Singhal V, et al. Among authors: tuza za.
Synth Biol (Oxf). 2021 Aug 21;6(1):ysab016. doi: 10.1093/synbio/ysab016. eCollection 2021.
Synth Biol (Oxf). 2021.
PMID: 34430709
Free PMC article.
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Gene circuit performance characterization and resource usage in a cell-free "breadboard".
Siegal-Gaskins D, Tuza ZA, Kim J, Noireaux V, Murray RM.
Siegal-Gaskins D, et al. Among authors: tuza za.
ACS Synth Biol. 2014 Jun 20;3(6):416-25. doi: 10.1021/sb400203p. Epub 2014 Apr 7.
ACS Synth Biol. 2014.
PMID: 24670245
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