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Nanopore basecalling from a perspective of instance segmentation.
Zhang YZ, Akdemir A, Tremmel G, Imoto S, Miyano S, Shibuya T, Yamaguchi R. Zhang YZ, et al. Among authors: tremmel g. BMC Bioinformatics. 2020 Apr 23;21(Suppl 3):136. doi: 10.1186/s12859-020-3459-0. BMC Bioinformatics. 2020. PMID: 32321433 Free PMC article.
Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation.
Fujimoto K, Kimura Y, Allegretti JR, Yamamoto M, Zhang YZ, Katayama K, Tremmel G, Kawaguchi Y, Shimohigoshi M, Hayashi T, Uematsu M, Yamaguchi K, Furukawa Y, Akiyama Y, Yamaguchi R, Crowe SE, Ernst PB, Miyano S, Kiyono H, Imoto S, Uematsu S. Fujimoto K, et al. Among authors: tremmel g. Gastroenterology. 2021 May;160(6):2089-2102.e12. doi: 10.1053/j.gastro.2021.02.013. Epub 2021 Feb 9. Gastroenterology. 2021. PMID: 33577875 Free PMC article.
Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts.
Fujimoto K, Kimura Y, Shimohigoshi M, Satoh T, Sato S, Tremmel G, Uematsu M, Kawaguchi Y, Usui Y, Nakano Y, Hayashi T, Kashima K, Yuki Y, Yamaguchi K, Furukawa Y, Kakuta M, Akiyama Y, Yamaguchi R, Crowe SE, Ernst PB, Miyano S, Kiyono H, Imoto S, Uematsu S. Fujimoto K, et al. Among authors: tremmel g. Cell Host Microbe. 2020 Sep 9;28(3):380-389.e9. doi: 10.1016/j.chom.2020.06.005. Epub 2020 Jul 10. Cell Host Microbe. 2020. PMID: 32652061 Free article.
Systems biology model repository for macrophage pathway simulation.
Nagasaki M, Saito A, Fujita A, Tremmel G, Ueno K, Ikeda E, Jeong E, Miyano S. Nagasaki M, et al. Among authors: tremmel g. Bioinformatics. 2011 Jun 1;27(11):1591-3. doi: 10.1093/bioinformatics/btr173. Epub 2011 Apr 19. Bioinformatics. 2011. PMID: 21505034