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Page 1
Flow Decomposition With Subpath Constraints.
Williams L, Tomescu AI, Mumey B. Williams L, et al. Among authors: tomescu ai. IEEE/ACM Trans Comput Biol Bioinform. 2023 Jan-Feb;20(1):360-370. doi: 10.1109/TCBB.2022.3147697. Epub 2023 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2023. PMID: 35104222
Safely Filling Gaps with Partial Solutions Common to All Solutions.
Salmela L, Tomescu AI. Salmela L, et al. Among authors: tomescu ai. IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):617-626. doi: 10.1109/TCBB.2017.2785831. Epub 2018 Jan 15. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29994355
A safe and complete algorithm for metagenomic assembly.
Obscura Acosta N, Mäkinen V, Tomescu AI. Obscura Acosta N, et al. Among authors: tomescu ai. Algorithms Mol Biol. 2018 Feb 7;13:3. doi: 10.1186/s13015-018-0122-7. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29445416 Free PMC article.
Matchtigs: minimum plain text representation of k-mer sets.
Schmidt S, Khan S, Alanko JN, Pibiri GE, Tomescu AI. Schmidt S, et al. Among authors: tomescu ai. Genome Biol. 2023 Jun 9;24(1):136. doi: 10.1186/s13059-023-02968-z. Genome Biol. 2023. PMID: 37296461 Free PMC article.
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG.
Caceres M, Mumey B, Husic E, Rizzi R, Cairo M, Sahlin K, Tomescu AI. Caceres M, et al. Among authors: tomescu ai. IEEE/ACM Trans Comput Biol Bioinform. 2022 Nov-Dec;19(6):3673-3684. doi: 10.1109/TCBB.2021.3131203. Epub 2022 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 34847041
Gap Filling as Exact Path Length Problem.
Salmela L, Sahlin K, Mäkinen V, Tomescu AI. Salmela L, et al. Among authors: tomescu ai. J Comput Biol. 2016 May;23(5):347-61. doi: 10.1089/cmb.2015.0197. Epub 2016 Mar 9. J Comput Biol. 2016. PMID: 26959081
28 results