Shmakov SA[au] - Search Results

Year	Number of Results
2017	1
2018	2
2019	4
2020	5
2021	4
2023	3
2024	0

1

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.

Makarova KS, Wolf YI, Iranzo J, Shmakov SA, Alkhnbashi OS, Brouns SJJ, Charpentier E, Cheng D, Haft DH, Horvath P, Moineau S, Mojica FJM, Scott D, Shah SA, Siksnys V, Terns MP, Venclovas Č, White MF, Yakunin AF, Yan W, Zhang F, Garrett RA, Backofen R, van der Oost J, Barrangou R, Koonin EV. Makarova KS, et al. Among authors: shmakov sa. Nat Rev Microbiol. 2020 Feb;18(2):67-83. doi: 10.1038/s41579-019-0299-x. Epub 2019 Dec 19. Nat Rev Microbiol. 2020. PMID: 31857715 Free PMC article. Review.

2

Toxin-antitoxin RNA pairs safeguard CRISPR-Cas systems.

Li M, Gong L, Cheng F, Yu H, Zhao D, Wang R, Wang T, Zhang S, Zhou J, Shmakov SA, Koonin EV, Xiang H. Li M, et al. Among authors: shmakov sa. Science. 2021 Apr 30;372(6541):eabe5601. doi: 10.1126/science.abe5601. Science. 2021. PMID: 33926924

3

Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems.

Shmakov SA, Barth ZK, Makarova KS, Wolf YI, Brover V, Peters JE, Koonin EV. Shmakov SA, et al. Nucleic Acids Res. 2023 Aug 25;51(15):8150-8168. doi: 10.1093/nar/gkad495. Nucleic Acids Res. 2023. PMID: 37283088 Free PMC article.

4

Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12.

Altae-Tran H, Shmakov SA, Makarova KS, Wolf YI, Kannan S, Zhang F, Koonin EV. Altae-Tran H, et al. Among authors: shmakov sa. Proc Natl Acad Sci U S A. 2023 Nov 28;120(48):e2308224120. doi: 10.1073/pnas.2308224120. Epub 2023 Nov 20. Proc Natl Acad Sci U S A. 2023. PMID: 37983496 Free PMC article.

5

CRISPR Arrays Away from cas Genes.

Shmakov SA, Utkina I, Wolf YI, Makarova KS, Severinov KV, Koonin EV. Shmakov SA, et al. CRISPR J. 2020 Dec;3(6):535-549. doi: 10.1089/crispr.2020.0062. CRISPR J. 2020. PMID: 33346707 Free PMC article.

6

CRISPR-Cas in mobile genetic elements: counter-defence and beyond.

Faure G, Shmakov SA, Yan WX, Cheng DR, Scott DA, Peters JE, Makarova KS, Koonin EV. Faure G, et al. Among authors: shmakov sa. Nat Rev Microbiol. 2019 Aug;17(8):513-525. doi: 10.1038/s41579-019-0204-7. Nat Rev Microbiol. 2019. PMID: 31165781

7

Widespread CRISPR repeat-like RNA regulatory elements in CRISPR-Cas systems.

Shmakov SA, Barth ZK, Makarova KS, Wolf YI, Brover V, Peters JE, Koonin EV. Shmakov SA, et al. bioRxiv [Preprint]. 2023 Mar 3:2023.03.03.530964. doi: 10.1101/2023.03.03.530964. bioRxiv. 2023. PMID: 37090614 Free PMC article. Updated. Preprint.

8

Machine-learning approach expands the repertoire of anti-CRISPR protein families.

Gussow AB, Park AE, Borges AL, Shmakov SA, Makarova KS, Wolf YI, Bondy-Denomy J, Koonin EV. Gussow AB, et al. Among authors: shmakov sa. Nat Commun. 2020 Jul 29;11(1):3784. doi: 10.1038/s41467-020-17652-0. Nat Commun. 2020. PMID: 32728052 Free PMC article.

9

Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes.

Shmakov SA, Wolf YI, Savitskaya E, Severinov KV, Koonin EV. Shmakov SA, et al. Commun Biol. 2020 Jun 22;3(1):321. doi: 10.1038/s42003-020-1014-1. Commun Biol. 2020. PMID: 32572116 Free PMC article.

10

CRISPRidentify: identification of CRISPR arrays using machine learning approach.

Mitrofanov A, Alkhnbashi OS, Shmakov SA, Makarova KS, Koonin EV, Backofen R. Mitrofanov A, et al. Among authors: shmakov sa. Nucleic Acids Res. 2021 Feb 26;49(4):e20. doi: 10.1093/nar/gkaa1158. Nucleic Acids Res. 2021. PMID: 33290505 Free PMC article.

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