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Page 1
BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing.
Methods Cell Biol. 2018;148:229-250. doi: 10.1016/bs.mcb.2018.09.011. Epub 2018 Oct 23.
Methods Cell Biol. 2018.
PMID: 30473071
Free PMC article.
DeCoDe: degenerate codon design for complete protein-coding DNA libraries.
Shimko TC, Fordyce PM, Orenstein Y.
Shimko TC, et al.
Bioinformatics. 2020 Jun 1;36(11):3357-3364. doi: 10.1093/bioinformatics/btaa162.
Bioinformatics. 2020.
PMID: 32176271
Free PMC article.
Item in Clipboard
Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.
Le DD, Shimko TC, Aditham AK, Keys AM, Longwell SA, Orenstein Y, Fordyce PM.
Le DD, et al. Among authors: shimko tc.
Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3702-E3711. doi: 10.1073/pnas.1715888115. Epub 2018 Mar 27.
Proc Natl Acad Sci U S A. 2018.
PMID: 29588420
Free PMC article.
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An Open-Source, Programmable Pneumatic Setup for Operation and Automated Control of Single- and Multi-Layer Microfluidic Devices.
Brower K, Puccinelli R, Markin CJ, Shimko TC, Longwell SA, Cruz B, Gomez-Sjoberg R, Fordyce PM.
Brower K, et al. Among authors: shimko tc.
HardwareX. 2018 Apr;3:117-134. doi: 10.1016/j.ohx.2017.10.001. Epub 2017 Oct 31.
HardwareX. 2018.
PMID: 30221210
Free PMC article.
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COPASutils: an R package for reading, processing, and visualizing data from COPAS large-particle flow cytometers.
Shimko TC, Andersen EC.
Shimko TC, et al.
PLoS One. 2014 Oct 20;9(10):e111090. doi: 10.1371/journal.pone.0111090. eCollection 2014.
PLoS One. 2014.
PMID: 25329171
Free PMC article.
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A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains.
Andersen EC, Shimko TC, Crissman JR, Ghosh R, Bloom JS, Seidel HS, Gerke JP, Kruglyak L.
Andersen EC, et al. Among authors: shimko tc.
G3 (Bethesda). 2015 Mar 13;5(5):911-20. doi: 10.1534/g3.115.017178.
G3 (Bethesda). 2015.
PMID: 25770127
Free PMC article.
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