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Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding.
Song SJ, Wang J, Martino C, Jiang L, Thompson WK, Shenhav L, McDonald D, Marotz C, Harris PR, Hernandez CD, Henderson N, Ackley E, Nardella D, Gillihan C, Montacuti V, Schweizer W, Jay M, Combellick J, Sun H, Garcia-Mantrana I, Gil Raga F, Collado MC, Rivera-Viñas JI, Campos-Rivera M, Ruiz-Calderon JF, Knight R, Dominguez-Bello MG. Song SJ, et al. Among authors: shenhav l. Med. 2021 Aug 13;2(8):951-964.e5. doi: 10.1016/j.medj.2021.05.003. Epub 2021 Jun 17. Med. 2021. PMID: 35590169 Free PMC article. Clinical Trial.
STENSL: Microbial Source Tracking with ENvironment SeLection.
An U, Shenhav L, Olson CA, Hsiao EY, Halperin E, Sankararaman S. An U, et al. Among authors: shenhav l. mSystems. 2022 Oct 26;7(5):e0099521. doi: 10.1128/msystems.00995-21. Epub 2022 Sep 1. mSystems. 2022. PMID: 36047699 Free PMC article.
FEAST: fast expectation-maximization for microbial source tracking.
Shenhav L, Thompson M, Joseph TA, Briscoe L, Furman O, Bogumil D, Mizrahi I, Pe'er I, Halperin E. Shenhav L, et al. Nat Methods. 2019 Jul;16(7):627-632. doi: 10.1038/s41592-019-0431-x. Epub 2019 Jun 10. Nat Methods. 2019. PMID: 31182859 Free PMC article.
Genome-wide methylation data mirror ancestry information.
Rahmani E, Shenhav L, Schweiger R, Yousefi P, Huen K, Eskenazi B, Eng C, Huntsman S, Hu D, Galanter J, Oh SS, Waldenberger M, Strauch K, Grallert H, Meitinger T, Gieger C, Holland N, Burchard EG, Zaitlen N, Halperin E. Rahmani E, et al. Among authors: shenhav l. Epigenetics Chromatin. 2017 Jan 3;10:1. doi: 10.1186/s13072-016-0108-y. eCollection 2017. Epigenetics Chromatin. 2017. PMID: 28149326 Free PMC article.
A Modified Mediterranean Ketogenic Diet mitigates modifiable risk factors of Alzheimer's Disease: a serum and CSF-based metabolic analysis.
Schweickart A, Batra R, Neth BJ, Martino C, Shenhav L, Zhang AR, Shi P, Karu N, Huynh K, Meikle PJ, Schimmel L, Dilmore AH, Blennow K, Zetterberg H, Blach C, Dorrestein PC, Knight R; Alzheimer’s Gut Microbiome Project Consortium; Craft S, Kaddurah-Daouk R, Krumsiek J. Schweickart A, et al. Among authors: shenhav l. medRxiv [Preprint]. 2023 Nov 27:2023.11.27.23298990. doi: 10.1101/2023.11.27.23298990. medRxiv. 2023. PMID: 38076824 Free PMC article. Preprint.
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.
Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R. Martino C, et al. Among authors: shenhav l. Nat Biotechnol. 2021 Feb;39(2):165-168. doi: 10.1038/s41587-020-0660-7. Epub 2020 Aug 31. Nat Biotechnol. 2021. PMID: 32868914 Free PMC article.
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