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2016 3
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2020 4
2021 1
2022 5
2023 1
2024 0

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19 results

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Page 1
Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches.
Guilliams M, Bonnardel J, Haest B, Vanderborght B, Wagner C, Remmerie A, Bujko A, Martens L, Thoné T, Browaeys R, De Ponti FF, Vanneste B, Zwicker C, Svedberg FR, Vanhalewyn T, Gonçalves A, Lippens S, Devriendt B, Cox E, Ferrero G, Wittamer V, Willaert A, Kaptein SJF, Neyts J, Dallmeier K, Geldhof P, Casaert S, Deplancke B, Ten Dijke P, Hoorens A, Vanlander A, Berrevoet F, Van Nieuwenhove Y, Saeys Y, Saelens W, Van Vlierberghe H, Devisscher L, Scott CL. Guilliams M, et al. Among authors: saelens w. Cell. 2022 Jan 20;185(2):379-396.e38. doi: 10.1016/j.cell.2021.12.018. Epub 2022 Jan 11. Cell. 2022. PMID: 35021063 Free PMC article.
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.
Li H, Janssens J, De Waegeneer M, Kolluru SS, Davie K, Gardeux V, Saelens W, David FPA, Brbić M, Spanier K, Leskovec J, McLaughlin CN, Xie Q, Jones RC, Brueckner K, Shim J, Tattikota SG, Schnorrer F, Rust K, Nystul TG, Carvalho-Santos Z, Ribeiro C, Pal S, Mahadevaraju S, Przytycka TM, Allen AM, Goodwin SF, Berry CW, Fuller MT, White-Cooper H, Matunis EL, DiNardo S, Galenza A, O'Brien LE, Dow JAT; FCA Consortium§; Jasper H, Oliver B, Perrimon N, Deplancke B, Quake SR, Luo L, Aerts S, Agarwal D, Ahmed-Braimah Y, Arbeitman M, Ariss MM, Augsburger J, Ayush K, Baker CC, Banisch T, Birker K, Bodmer R, Bolival B, Brantley SE, Brill JA, Brown NC, Buehner NA, Cai XT, Cardoso-Figueiredo R, Casares F, Chang A, Clandinin TR, Crasta S, Desplan C, Detweiler AM, Dhakan DB, Donà E, Engert S, Floc'hlay S, George N, González-Segarra AJ, Groves AK, Gumbin S, Guo Y, Harris DE, Heifetz Y, Holtz SL, Horns F, Hudry B, Hung RJ, Jan YN, Jaszczak JS, Jefferis GSXE, Karkanias J, Karr TL, Katheder NS, Kezos J, Kim AA, Kim SK, Kockel L, Konstantinides N, Kornberg TB, Krause HM, Labott AT, Laturney M, Lehmann R, Leinwand S, Li J, Li JSS, Li K, Li K, Li L, Li T, Litovchenko M, Liu HH, Liu Y, Lu TC, Manni… See abstract for full author list ➔ Li H, et al. Among authors: saelens w. Science. 2022 Mar 4;375(6584):eabk2432. doi: 10.1126/science.abk2432. Epub 2022 Mar 4. Science. 2022. PMID: 35239393 Free PMC article.
Live-seq enables temporal transcriptomic recording of single cells.
Chen W, Guillaume-Gentil O, Rainer PY, Gäbelein CG, Saelens W, Gardeux V, Klaeger A, Dainese R, Zachara M, Zambelli T, Vorholt JA, Deplancke B. Chen W, et al. Among authors: saelens w. Nature. 2022 Aug;608(7924):733-740. doi: 10.1038/s41586-022-05046-9. Epub 2022 Aug 17. Nature. 2022. PMID: 35978187 Free PMC article.
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Van de Sande B, Flerin C, Davie K, De Waegeneer M, Hulselmans G, Aibar S, Seurinck R, Saelens W, Cannoodt R, Rouchon Q, Verbeiren T, De Maeyer D, Reumers J, Saeys Y, Aerts S. Van de Sande B, et al. Among authors: saelens w. Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. Nat Protoc. 2020. PMID: 32561888
Essential guidelines for computational method benchmarking.
Weber LM, Saelens W, Cannoodt R, Soneson C, Hapfelmeier A, Gardner PP, Boulesteix AL, Saeys Y, Robinson MD. Weber LM, et al. Among authors: saelens w. Genome Biol. 2019 Jun 20;20(1):125. doi: 10.1186/s13059-019-1738-8. Genome Biol. 2019. PMID: 31221194 Free PMC article. Review.
Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes.
Raz AA, Vida GS, Stern SR, Mahadevaraju S, Fingerhut JM, Viveiros JM, Pal S, Grey JR, Grace MR, Berry CW, Li H, Janssens J, Saelens W, Shao Z, Hu C, Yamashita YM, Przytycka T, Oliver B, Brill JA, Krause H, Matunis EL, White-Cooper H, DiNardo S, Fuller MT. Raz AA, et al. Among authors: saelens w. Elife. 2023 Feb 16;12:e82201. doi: 10.7554/eLife.82201. Elife. 2023. PMID: 36795469 Free PMC article.
Network Inference from Single-Cell Transcriptomic Data.
Todorov H, Cannoodt R, Saelens W, Saeys Y. Todorov H, et al. Among authors: saelens w. Methods Mol Biol. 2019;1883:235-249. doi: 10.1007/978-1-4939-8882-2_10. Methods Mol Biol. 2019. PMID: 30547403
19 results