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Page 1
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
Algorithms Mol Biol. 2017 Feb 22;12:2. doi: 10.1186/s13015-017-0091-2. eCollection 2017.
Algorithms Mol Biol. 2017.
PMID: 28250805
Free PMC article.
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs.
Sacomoto G, Lacroix V, Sagot MF.
Sacomoto G, et al.
Algorithms Mol Biol. 2015 Jun 27;10:20. doi: 10.1186/s13015-015-0046-4. eCollection 2015.
Algorithms Mol Biol. 2015.
PMID: 26120359
Free PMC article.
Item in Clipboard
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data.
Benoit-Pilven C, Marchet C, Chautard E, Lima L, Lambert MP, Sacomoto G, Rey A, Cologne A, Terrone S, Dulaurier L, Claude JB, Bourgeois CF, Auboeuf D, Lacroix V.
Benoit-Pilven C, et al. Among authors: sacomoto g.
Sci Rep. 2018 Mar 9;8(1):4307. doi: 10.1038/s41598-018-21770-7.
Sci Rep. 2018.
PMID: 29523794
Free PMC article.
Item in Clipboard
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
Sacomoto GA, Kielbassa J, Chikhi R, Uricaru R, Antoniou P, Sagot MF, Peterlongo P, Lacroix V.
Sacomoto GA, et al.
BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S5. doi: 10.1186/1471-2105-13-S6-S5.
BMC Bioinformatics. 2012.
PMID: 22537044
Free PMC article.
Item in Clipboard
Using cascading Bloom filters to improve the memory usage for de Brujin graphs.
Salikhov K, Sacomoto G, Kucherov G.
Salikhov K, et al. Among authors: sacomoto g.
Algorithms Mol Biol. 2014 Feb 24;9(1):2. doi: 10.1186/1748-7188-9-2.
Algorithms Mol Biol. 2014.
PMID: 24565280
Free PMC article.
Item in Clipboard
Lossless filter for multiple repeats with bounded edit distance.
Peterlongo P, Sacomoto GA, do Lago AP, Pisanti N, Sagot MF.
Peterlongo P, et al. Among authors: sacomoto ga.
Algorithms Mol Biol. 2009 Jan 30;4:3. doi: 10.1186/1748-7188-4-3.
Algorithms Mol Biol. 2009.
PMID: 19183438
Free PMC article.
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Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.
Le Bras Y, Collin O, Monjeaud C, Lacroix V, Rivals É, Lemaitre C, Miele V, Sacomoto G, Marchet C, Cazaux B, Zine El Aabidine A, Salmela L, Alves-Carvalho S, Andrieux A, Uricaru R, Peterlongo P.
Le Bras Y, et al. Among authors: sacomoto g.
Gigascience. 2016 Feb 11;5:9. doi: 10.1186/s13742-015-0105-2. eCollection 2016.
Gigascience. 2016.
PMID: 26870323
Free PMC article.
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