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FourCSeq: analysis of 4C sequencing data.
Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. Klein FA, et al. Among authors: pakozdi t. Bioinformatics. 2015 Oct 1;31(19):3085-91. doi: 10.1093/bioinformatics/btv335. Epub 2015 Jun 1. Bioinformatics. 2015. PMID: 26034064 Free PMC article.
Ectopic protein interactions within BRD4-chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma.
Alekseyenko AA, Walsh EM, Zee BM, Pakozdi T, Hsi P, Lemieux ME, Dal Cin P, Ince TA, Kharchenko PV, Kuroda MI, French CA. Alekseyenko AA, et al. Among authors: pakozdi t. Proc Natl Acad Sci U S A. 2017 May 23;114(21):E4184-E4192. doi: 10.1073/pnas.1702086114. Epub 2017 May 8. Proc Natl Acad Sci U S A. 2017. PMID: 28484033 Free PMC article.
A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells.
van Riel B, Pakozdi T, Brouwer R, Monteiro R, Tuladhar K, Franke V, Bryne JC, Jorna R, Rijkers EJ, van Ijcken W, Andrieu-Soler C, Demmers J, Patient R, Soler E, Lenhard B, Grosveld F. van Riel B, et al. Among authors: pakozdi t. Mol Cell Biol. 2012 Oct;32(19):3814-22. doi: 10.1128/MCB.05938-11. Epub 2012 Jul 16. Mol Cell Biol. 2012. PMID: 22801375 Free PMC article.