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Page 1
Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Error correcting optical mapping data.
Mukherjee K, Washimkar D, Muggli MD, Salmela L, Boucher C. Mukherjee K, et al. Among authors: muggli md. Gigascience. 2018 Jun 1;7(6):giy061. doi: 10.1093/gigascience/giy061. Gigascience. 2018. PMID: 29846578 Free PMC article.
Metagenome SNP calling via read-colored de Bruijn graphs.
Alipanahi B, Muggli MD, Jundi M, Noyes NR, Boucher C. Alipanahi B, et al. Among authors: muggli md. Bioinformatics. 2021 Apr 1;36(22-23):5275-5281. doi: 10.1093/bioinformatics/btaa081. Bioinformatics. 2021. PMID: 32049324 Free PMC article.
Fast and accurate correction of optical mapping data via spaced seeds.
Salmela L, Mukherjee K, Puglisi SJ, Muggli MD, Boucher C. Salmela L, et al. Among authors: muggli md. Bioinformatics. 2020 May 1;36(9):2974. doi: 10.1093/bioinformatics/btaa101. Bioinformatics. 2020. PMID: 32187358 Free PMC article. No abstract available.