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Page 1
Representing Catalytic Mechanisms with Rule Composition.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: fontana w. J Chem Inf Model. 2022 Nov 28;62(22):5513-5524. doi: 10.1021/acs.jcim.2c00426. Epub 2022 Nov 3. J Chem Inf Model. 2022. PMID: 36326605
Dynamic Influence Networks for Rule-Based Models.
Forbes AG, Burks A, Lee K, Li X, Boutillier P, Krivine J, Fontana W. Forbes AG, et al. Among authors: fontana w. IEEE Trans Vis Comput Graph. 2018 Jan;24(1):184-194. doi: 10.1109/TVCG.2017.2745280. Epub 2017 Aug 29. IEEE Trans Vis Comput Graph. 2018. PMID: 28866584
Graph transformation for enzymatic mechanisms.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: fontana w. Bioinformatics. 2021 Jul 12;37(Suppl_1):i392-i400. doi: 10.1093/bioinformatics/btab296. Bioinformatics. 2021. PMID: 34252947 Free PMC article.
The Kappa platform for rule-based modeling.
Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W. Boutillier P, et al. Among authors: fontana w. Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272. Bioinformatics. 2018. PMID: 29950016 Free PMC article.
Rules for modeling signal-transduction systems.
Hlavacek WS, Faeder JR, Blinov ML, Posner RG, Hucka M, Fontana W. Hlavacek WS, et al. Among authors: fontana w. Sci STKE. 2006 Jul 18;2006(344):re6. doi: 10.1126/stke.3442006re6. Sci STKE. 2006. PMID: 16849649 Review.
Perspective: Evolution and detection of genetic robustness.
de Visser JA, Hermisson J, Wagner GP, Ancel Meyers L, Bagheri-Chaichian H, Blanchard JL, Chao L, Cheverud JM, Elena SF, Fontana W, Gibson G, Hansen TF, Krakauer D, Lewontin RC, Ofria C, Rice SH, von Dassow G, Wagner A, Whitlock MC. de Visser JA, et al. Among authors: fontana w. Evolution. 2003 Sep;57(9):1959-72. doi: 10.1111/j.0014-3820.2003.tb00377.x. Evolution. 2003. PMID: 14575319 Review.
Modelling 'evo-devo' with RNA.
Fontana W. Fontana W. Bioessays. 2002 Dec;24(12):1164-77. doi: 10.1002/bies.10190. Bioessays. 2002. PMID: 12447981 Review.
Combinatorial protein-protein interactions on a polymerizing scaffold.
Ortiz-Muñoz A, Medina-Abarca HF, Fontana W. Ortiz-Muñoz A, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2020 Feb 11;117(6):2930-2937. doi: 10.1073/pnas.1912745117. Epub 2020 Jan 24. Proc Natl Acad Sci U S A. 2020. PMID: 31980533 Free PMC article.
Chemistry. Pulling strings.
Fontana W. Fontana W. Science. 2006 Dec 8;314(5805):1552-3. doi: 10.1126/science.1135101. Science. 2006. PMID: 17158311 No abstract available.
50 results