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Page 1
Ariadne: synthetic long read deconvolution using assembly graphs.
Mak L, Meleshko D, Danko DC, Barakzai WN, Maharjan S, Belchikov N, Hajirasouliha I. Mak L, et al. Among authors: danko dc. Genome Biol. 2023 Aug 28;24(1):197. doi: 10.1186/s13059-023-03033-5. Genome Biol. 2023. PMID: 37641111 Free PMC article.
System-wide transcriptome damage and tissue identity loss in COVID-19 patients.
Park J, Foox J, Hether T, Danko DC, Warren S, Kim Y, Reeves J, Butler DJ, Mozsary C, Rosiene J, Shaiber A, Afshin EE, MacKay M, Rendeiro AF, Bram Y, Chandar V, Geiger H, Craney A, Velu P, Melnick AM, Hajirasouliha I, Beheshti A, Taylor D, Saravia-Butler A, Singh U, Wurtele ES, Schisler J, Fennessey S, Corvelo A, Zody MC, Germer S, Salvatore S, Levy S, Wu S, Tatonetti NP, Shapira S, Salvatore M, Westblade LF, Cushing M, Rennert H, Kriegel AJ, Elemento O, Imielinski M, Rice CM, Borczuk AC, Meydan C, Schwartz RE, Mason CE. Park J, et al. Among authors: danko dc. Cell Rep Med. 2022 Jan 24;3(2):100522. doi: 10.1016/j.xcrm.2022.100522. eCollection 2022 Feb 15. Cell Rep Med. 2022. PMID: 35233546 Free PMC article.
Entropy-scaling search of massive biological data.
Yu YW, Daniels NM, Danko DC, Berger B. Yu YW, et al. Among authors: danko dc. Cell Syst. 2015 Aug 26;1(2):130-140. doi: 10.1016/j.cels.2015.08.004. Cell Syst. 2015. PMID: 26436140 Free PMC article.
Characterization of the public transit air microbiome and resistome reveals geographical specificity.
Leung MHY, Tong X, Bøifot KO, Bezdan D, Butler DJ, Danko DC, Gohli J, Green DC, Hernandez MT, Kelly FJ, Levy S, Mason-Buck G, Nieto-Caballero M, Syndercombe-Court D, Udekwu K, Young BG, Mason CE, Dybwad M, Lee PKH. Leung MHY, et al. Among authors: danko dc. Microbiome. 2021 May 26;9(1):112. doi: 10.1186/s40168-021-01044-7. Microbiome. 2021. PMID: 34039416 Free PMC article.
Sequencing of Circulating Microbial Cell-Free DNA Can Identify Pathogens in Periprosthetic Joint Infections.
Echeverria AP, Cohn IS, Danko DC, Shanaj S, Blair L, Hollemon D, Carli AV, Sculco PK, Ho C, Meshulam-Simon G, Mironenko C, Ivashkiv LB, Goodman SM, Grizas A, Westrich GH, Padgett DE, Figgie MP, Bostrom MP, Sculco TP, Hong DK, Hepinstall MS, Bauer TW, Blauwkamp TA, Brause BD, Miller AO, Henry MW, Ahmed AA, Cross MB, Mason CE, Donlin LT. Echeverria AP, et al. Among authors: danko dc. J Bone Joint Surg Am. 2021 Sep 15;103(18):1705-1712. doi: 10.2106/JBJS.20.02229. J Bone Joint Surg Am. 2021. PMID: 34293751