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Page 1
Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data.
PeerJ. 2017 Sep 28;5:e3742. doi: 10.7717/peerj.3742. eCollection 2017.
PeerJ. 2017.
PMID: 28970965
Free PMC article.
A transient ischemic environment induces reversible compaction of chromatin.
Kirmes I, Szczurek A, Prakash K, Charapitsa I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C, Reid G.
Kirmes I, et al. Among authors: charapitsa i.
Genome Biol. 2015 Nov 5;16:246. doi: 10.1186/s13059-015-0802-2.
Genome Biol. 2015.
PMID: 26541514
Free PMC article.
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The nonspecific lethal complex is a transcriptional regulator in Drosophila.
Raja SJ, Charapitsa I, Conrad T, Vaquerizas JM, Gebhardt P, Holz H, Kadlec J, Fraterman S, Luscombe NM, Akhtar A.
Raja SJ, et al. Among authors: charapitsa i.
Mol Cell. 2010 Jun 25;38(6):827-41. doi: 10.1016/j.molcel.2010.05.021.
Mol Cell. 2010.
PMID: 20620954
Free article.
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Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays.
Honkela A, Peltonen J, Topa H, Charapitsa I, Matarese F, Grote K, Stunnenberg HG, Reid G, Lawrence ND, Rattray M.
Honkela A, et al. Among authors: charapitsa i.
Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):13115-20. doi: 10.1073/pnas.1420404112. Epub 2015 Oct 5.
Proc Natl Acad Sci U S A. 2015.
PMID: 26438844
Free PMC article.
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Contrasting effects of Elg1-RFC and Ctf18-RFC inactivation in the absence of fully functional RFC in fission yeast.
Kim J, Robertson K, Mylonas KJ, Gray FC, Charapitsa I, MacNeill SA.
Kim J, et al. Among authors: charapitsa i.
Nucleic Acids Res. 2005 Jul 21;33(13):4078-89. doi: 10.1093/nar/gki728. Print 2005.
Nucleic Acids Res. 2005.
PMID: 16040599
Free PMC article.
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Replicative senescence is associated with nuclear reorganization and with DNA methylation at specific transcription factor binding sites.
Hänzelmann S, Beier F, Gusmao EG, Koch CM, Hummel S, Charapitsa I, Joussen S, Benes V, Brümmendorf TH, Reid G, Costa IG, Wagner W.
Hänzelmann S, et al. Among authors: charapitsa i.
Clin Epigenetics. 2015 Mar 4;7(1):19. doi: 10.1186/s13148-015-0057-5. eCollection 2015.
Clin Epigenetics. 2015.
PMID: 25763115
Free PMC article.
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Integrative analysis of deep sequencing data identifies estrogen receptor early response genes and links ATAD3B to poor survival in breast cancer.
Ovaska K, Matarese F, Grote K, Charapitsa I, Cervera A, Liu C, Reid G, Seifert M, Stunnenberg HG, Hautaniemi S.
Ovaska K, et al. Among authors: charapitsa i.
PLoS Comput Biol. 2013;9(6):e1003100. doi: 10.1371/journal.pcbi.1003100. Epub 2013 Jun 20.
PLoS Comput Biol. 2013.
PMID: 23818839
Free PMC article.
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