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Year Number of Results
2010 1
2013 1
2014 1
2015 3
2016 7
2017 7
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2019 2
2020 2
2021 3
2022 1
2024 0

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29 results

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Page 1
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: bremges a. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Assessing taxonomic metagenome profilers with OPAL.
Meyer F, Bremges A, Belmann P, Janssen S, McHardy AC, Koslicki D. Meyer F, et al. Among authors: bremges a. Genome Biol. 2019 Mar 4;20(1):51. doi: 10.1186/s13059-019-1646-y. Genome Biol. 2019. PMID: 30832730 Free PMC article.
CAMITAX: Taxon labels for microbial genomes.
Bremges A, Fritz A, McHardy AC. Bremges A, et al. Gigascience. 2020 Jan 1;9(1):giz154. doi: 10.1093/gigascience/giz154. Gigascience. 2020. PMID: 31909794 Free PMC article.
CAMISIM: simulating metagenomes and microbial communities.
Fritz A, Hofmann P, Majda S, Dahms E, Dröge J, Fiedler J, Lesker TR, Belmann P, DeMaere MZ, Darling AE, Sczyrba A, Bremges A, McHardy AC. Fritz A, et al. Among authors: bremges a. Microbiome. 2019 Feb 8;7(1):17. doi: 10.1186/s40168-019-0633-6. Microbiome. 2019. PMID: 30736849 Free PMC article.
Haploflow: strain-resolved de novo assembly of viral genomes.
Fritz A, Bremges A, Deng ZL, Lesker TR, Götting J, Ganzenmueller T, Sczyrba A, Dilthey A, Klawonn F, McHardy AC. Fritz A, et al. Among authors: bremges a. Genome Biol. 2021 Jul 19;22(1):212. doi: 10.1186/s13059-021-02426-8. Genome Biol. 2021. PMID: 34281604 Free PMC article. No abstract available.
Haploflow: Strain-resolved de novo assembly of viral genomes.
Fritz A, Bremges A, Deng ZL, Lesker TR, Götting J, Ganzenmüller T, Sczyrba A, Dilthey A, Klawonn F, McHardy AC. Fritz A, et al. Among authors: bremges a. bioRxiv [Preprint]. 2021 Jan 26:2021.01.25.428049. doi: 10.1101/2021.01.25.428049. bioRxiv. 2021. PMID: 33532769 Free PMC article. Updated. Preprint.
Metagenomics and CAZyme Discovery.
Kunath BJ, Bremges A, Weimann A, McHardy AC, Pope PB. Kunath BJ, et al. Among authors: bremges a. Methods Mol Biol. 2017;1588:255-277. doi: 10.1007/978-1-4939-6899-2_20. Methods Mol Biol. 2017. PMID: 28417375
29 results