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Page 1
FEM: feature-enhanced map.
Afonine PV, Moriarty NW, Mustyakimov M, Sobolev OV, Terwilliger TC, Turk D, Urzhumtsev A, Adams PD. Afonine PV, et al. Acta Crystallogr D Biol Crystallogr. 2015 Mar;71(Pt 3):646-66. doi: 10.1107/S1399004714028132. Epub 2015 Feb 26. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 25760612 Free PMC article.
The solvent component of macromolecular crystals.
Weichenberger CX, Afonine PV, Kantardjieff K, Rupp B. Weichenberger CX, et al. Among authors: afonine pv. Acta Crystallogr D Biol Crystallogr. 2015 May;71(Pt 5):1023-38. doi: 10.1107/S1399004715006045. Epub 2015 Apr 30. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 25945568 Free PMC article. Review.
Q|R: quantum-based refinement.
Zheng M, Reimers JR, Waller MP, Afonine PV. Zheng M, et al. Among authors: afonine pv. Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):45-52. doi: 10.1107/S2059798316019847. Epub 2017 Jan 1. Acta Crystallogr D Struct Biol. 2017. PMID: 28045384 Free PMC article.
Universal parameters of bulk-solvent masks.
Urzhumtsev A, Adams P, Afonine P. Urzhumtsev A, et al. Among authors: afonine p. Acta Crystallogr A Found Adv. 2024 Mar 1;80(Pt 2):194-201. doi: 10.1107/S2053273324000299. Epub 2024 Feb 9. Acta Crystallogr A Found Adv. 2024. PMID: 38334174 Free PMC article.
Improved AlphaFold modeling with implicit experimental information.
Terwilliger TC, Poon BK, Afonine PV, Schlicksup CJ, Croll TI, Millán C, Richardson JS, Read RJ, Adams PD. Terwilliger TC, et al. Among authors: afonine pv. Nat Methods. 2022 Nov;19(11):1376-1382. doi: 10.1038/s41592-022-01645-6. Epub 2022 Oct 20. Nat Methods. 2022. PMID: 36266465 Free PMC article.
Density modification of cryo-EM maps.
Terwilliger TC, Sobolev OV, Afonine PV, Adams PD, Read RJ. Terwilliger TC, et al. Among authors: afonine pv. Acta Crystallogr D Struct Biol. 2020 Oct 1;76(Pt 10):912-925. doi: 10.1107/S205979832001061X. Epub 2020 Sep 22. Acta Crystallogr D Struct Biol. 2020. PMID: 33021493 Free PMC article.
Real-space quantum-based refinement for cryo-EM: Q|R#3.
Wang L, Kruse H, Sobolev OV, Moriarty NW, Waller MP, Afonine PV, Biczysko M. Wang L, et al. Among authors: afonine pv. Acta Crystallogr D Struct Biol. 2020 Dec 1;76(Pt 12):1184-1191. doi: 10.1107/S2059798320013194. Epub 2020 Nov 19. Acta Crystallogr D Struct Biol. 2020. PMID: 33263324
Visualizing chaperone-assisted protein folding.
Horowitz S, Salmon L, Koldewey P, Ahlstrom LS, Martin R, Quan S, Afonine PV, van den Bedem H, Wang L, Xu Q, Trievel RC, Brooks CL 3rd, Bardwell JC. Horowitz S, et al. Among authors: afonine pv. Nat Struct Mol Biol. 2016 Jul;23(7):691-7. doi: 10.1038/nsmb.3237. Epub 2016 May 30. Nat Struct Mol Biol. 2016. PMID: 27239796 Free PMC article.
96 results