Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli

Nucleic Acids Res. 2008 Nov;36(19):e124. doi: 10.1093/nar/gkn545. Epub 2008 Aug 27.

Abstract

RNA thermometers are thermosensors that regulate gene expression by temperature-induced changes in RNA conformation. Naturally occurring RNA thermometers exhibit complex secondary structures which are believed to undergo a series of gradual structural changes in response to temperature shifts. Here, we report the de novo design of considerably simpler RNA thermometers that provide useful RNA-only tools to regulate bacterial gene expression by a shift in the growth temperature. We show that a single small stem-loop structure containing the ribosome binding site is sufficient to construct synthetic RNA thermometers that work efficiently at physiological temperatures. Our data suggest that the thermometers function by a simple melting mechanism and thus provide minimum size on/off switches to experimentally induce or repress gene expression by temperature.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / chemical synthesis
  • 5' Untranslated Regions / chemistry*
  • Escherichia coli / genetics*
  • Gene Expression Regulation, Bacterial*
  • Green Fluorescent Proteins / analysis
  • Green Fluorescent Proteins / genetics
  • Nucleic Acid Conformation
  • Peptide Termination Factors / genetics
  • Temperature*

Substances

  • 5' Untranslated Regions
  • Peptide Termination Factors
  • Green Fluorescent Proteins