RT Journal Article
SR Electronic
T1 The UCSC Genome Browser database: 2016 update
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 027037
DO 10.1101/027037
A1 Matthew L. Speir
A1 Ann S. Zweig
A1 Kate R. Rosenbloom
A1 Brian J. Raney
A1 Benedict Paten
A1 Parisa Nejad
A1 Brian T. Lee
A1 Katrina Learned
A1 Donna Karolchik
A1 Angie S. Hinrichs
A1 Steve Heitner
A1 Rachel A. Harte
A1 Maximilian Haeussler
A1 Luvina Guruvadoo
A1 Pauline A. Fujita
A1 Christopher Eisenhart
A1 Mark Diekhans
A1 Hiram Clawson
A1 Jonathan Casper
A1 Galt P. Barber
A1 David Haussler
A1 Robert M. Kuhn
A1 W. James Kent
YR 2015
UL http://biorxiv.org/content/early/2015/11/06/027037.abstract
AB For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for viewing and analyzing information from a large database of genome assemblies and their associated annotations. The UCSC Genome Browser has been under continuous development since its inception with new data sets and software features added frequently. Some release highlights of this year include new and updated genome browsers for various assemblies, including bonobo and zebrafish; new gene annotation sets; improvements to track and assembly hub support; and a new interactive tool, the “Data Integrator”, for intersecting data from multiple tracks. We have greatly expanded the data sets available on the most recent human assembly, hg38/GRCh38, to include updated gene prediction sets from GENCODE, more phenotype- and disease-associated variants from ClinVar and ClinGen, more genomic regulatory data, and a new multiple genome alignment.