PT  - JOURNAL ARTICLE
AU  - Krzysztof Bartoszek
TI  - Phylogenetic effective sample size
AID  - 10.1101/023242
DP  - 2015 Jan 01
TA  - bioRxiv
PG  - 023242
4099  - http://biorxiv.org/content/early/2015/07/27/023242.short
4100  - http://biorxiv.org/content/early/2015/07/27/023242.full
AB  - In this paper I address the question — how large is a phylogenetic sample? I propose a definition of a phylogenetic effective sample size for Brownian motion and Ornstein–Uhlenbeck processes — the regression effective sample size. I discuss how mutual information can be used to define an effective sample size in the non–normal process case and compare these two definitions to an already present concept of effective sample size (the mean effective sample size). Through a simulation study I find that the AICc is robust if one corrects for the number of species or effective number of species. Lastly I discuss how the concept of the phylogenetic effective sample size can be useful for biodiversity quantification, identification of interesting clades and deciding on the importance of phylogenetic correlations.