TY - JOUR T1 - <em>TransRate</em>: reference free quality assessment of <em>de-novo</em> transcriptome assemblies JF - bioRxiv DO - 10.1101/021626 SP - 021626 AU - Richard Smith-Unna AU - Chris Boursnell AU - Rob Patro AU - Julian M Hibberd AU - Steven Kelly Y1 - 2015/01/01 UR - http://biorxiv.org/content/early/2015/06/27/021626.abstract N2 - TransRate is a tool for reference-free quality assessment of de novo transcriptome assemblies. Using only sequenced reads as the input, TransRate measures the quality of individual contigs and whole assemblies, enabling assembly optimization and comparison. TransRate can accurately evaluate assemblies of conserved and novel RNA molecules of any kind in any species. We show that it is more accurate than comparable methods and demonstrate its use on a variety of data. ER -