RT Journal Article SR Electronic T1 The Genomic History Of Southeastern Europe JF bioRxiv FD Cold Spring Harbor Laboratory SP 135616 DO 10.1101/135616 A1 Iain Mathieson A1 Songül Alpaslan Roodenberg A1 Cosimo Posth A1 Anna Szécsényi-Nagy A1 Nadin Rohland A1 Swapan Mallick A1 Iñigo Olade A1 Nasreen Broomandkhoshbacht A1 Olivia Cheronet A1 Daniel Fernandes A1 Matthew Ferry A1 Beatriz Gamarra A1 Gloria González Fortes A1 Wolfgang Haak A1 Eadaoin Harney A1 Ben Krause-Kyora A1 Isil Kucukkalipci A1 Megan Michel A1 Alissa Mittnik A1 Kathrin Nägele A1 Mario Novak A1 Jonas Oppenheimer A1 Nick Patterson A1 Saskia Pfrengle A1 Kendra Sirak A1 Kristin Stewardson A1 Stefania Vai A1 Stefan Alexandrov A1 Kurt W. Alt A1 Radian Andreescu A1 Dragana Antonović A1 Abigail Ash A1 Nadezhda Atanassova A1 Krum Bacvarov A1 Mende Balázs Gusztáv A1 Hervé Bocherens A1 Michael Bolus A1 Adina Boroneanţ A1 Yavor Boyadzhiev A1 Alicja Budnik A1 Josip Burmaz A1 Stefan Chohadzhiev A1 Nicholas J. Conard A1 Richard Cottiaux A1 Maja Čuka A1 Christophe Cupillard A1 Dorothée G. Drucker A1 Nedko Elenski A1 Michael Francken A1 Borislava Galabova A1 Georgi Ganetovski A1 Bernard Gely A1 Tamás Hajdu A1 Veneta Handzhyiska A1 Katerina Harvati A1 Thomas Higham A1 Stanislav Iliev A1 Ivor Janković A1 Ivor Karavanić A1 Douglas J. Kennett A1 Darko Komšo A1 Alexandra Kozak A1 Damian Labuda A1 Martina Lari A1 Catalin Lazar A1 Maleen Leppek A1 Krassimir Leshtakov A1 Domenico Lo Vetro A1 Dženi Los A1 Ivaylo Lozanov A1 Maria Malina A1 Fabio Martini A1 Kath McSweeney A1 Harald Meller A1 Marko Menđušić A1 Pavel Mirea A1 Vyacheslav Moiseyev A1 Vanya Petrova A1 T. Douglas Price A1 Angela Simalcsik A1 Luca Sineo A1 Mario Šlaus A1 Vladimir Slavchev A1 Petar Stanev A1 Andrej Starović A1 Tamás Szeniczey A1 Sahra Talamo A1 Maria Teschler-Nicola A1 Corinne Thevenet A1 Ivan Valchev A1 Frédérique Valentin A1 Sergey Vasilyev A1 Fanica Veljanovska A1 Svetlana Venelinova A1 Elizaveta Veselovskaya A1 Bence Viola A1 Cristian Virag A1 Joško Zaninović A1 Steve Zauner A1 Philipp W. Stockhammer A1 Giulio Catalano A1 Raiko Krauβ A1 David Caramelli A1 Gunita Zariņa A1 Bisserka Gaydarska A1 Malcolm Lillie A1 Alexey G. Nikitin A1 Inna Potekhina A1 Anastasia Papathanasiou A1 Dušan Borić A1 Clive Bonsall A1 Johannes Krause A1 Ron Pinhasi A1 David Reich YR 2017 UL http://biorxiv.org/content/early/2017/05/09/135616.abstract AB Farming was first introduced to southeastern Europe in the mid-7th millennium BCE– brought by migrants from Anatolia who settled in the region before spreading throughout Europe. However, the dynamics of the interaction between the first farmers and the indigenous hunter-gatherers remain poorly understood because of the near absence of ancient DNA from the region. We report new genome-wide ancient DNA data from 204 individuals–65 Paleolithic and Mesolithic, 93 Neolithic, and 46 Copper, Bronze and Iron Age–who lived in southeastern Europe and surrounding regions between about 12,000 and 500 BCE. We document that the hunter-gatherer populations of southeastern Europe, the Baltic, and the North Pontic Steppe were distinctive from those of western Europe, with a West-East cline of ancestry. We show that the people who brought farming to Europe were not part of a single population, as early farmers from southern Greece are not descended from the Neolithic population of northwestern Anatolia that was ancestral to all other European farmers. The ancestors of the first farmers of northern and western Europe passed through southeastern Europe with limited admixture with local hunter-gatherers, but we show that some groups that remained in the region mixed extensively with local hunter-gatherers, with relatively sex-balanced admixture compared to the male-biased hunter-gatherer admixture that we show prevailed later in the North and West. After the spread of farming, southeastern Europe continued to be a nexus between East and West, with intermittent steppe ancestry, including in individuals from the Varna I cemetery and associated with the Cucuteni-Trypillian archaeological complex, up to 2,000 years before the Steppe migration that replaced much of northern Europe’s population.