RT Journal Article SR Electronic T1 QuPath: Open source software for digital pathology image analysis JF bioRxiv FD Cold Spring Harbor Laboratory SP 099796 DO 10.1101/099796 A1 Peter Bankhead A1 Maurice B Loughrey A1 José A Fernández A1 Yvonne Dombrowski A1 Darragh G McArt A1 Philip D Dunne A1 Stephen McQuaid A1 Ronan T Gray A1 Liam J Murray A1 Helen G Coleman A1 Jacqueline A James A1 Manuel Salto-Tellez A1 Peter W Hamilton YR 2017 UL http://biorxiv.org/content/early/2017/03/06/099796.abstract AB QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.