PT - JOURNAL ARTICLE AU - Marlon Stoeckius AU - Christoph Hafemeister AU - William Stephenson AU - Brian Houck-Loomis AU - Harold Swerdlow AU - Rahul Satija AU - Peter Smibert TI - Large-scale simultaneous measurement of epitopes and transcriptomes in single cells AID - 10.1101/113068 DP - 2017 Jan 01 TA - bioRxiv PG - 113068 4099 - http://biorxiv.org/content/early/2017/03/03/113068.short 4100 - http://biorxiv.org/content/early/2017/03/03/113068.full AB - Recent high-throughput single-cell sequencing approaches have been transformative for understanding complex cell populations, but are unable to provide additional phenotypic information, such as protein levels of well-established cell-surface markers. Using oligonucleotide-labeled antibodies, we integrate measurements of cellular proteins and transcriptomes into an efficient, sequencing-based readout of single cells. This method is compatible with existing single-cell sequencing approaches and will readily scale as the throughput of these methods increase.