RT Journal Article
SR Electronic
T1 Benchmarking BarraCUDA on Epigenetic DNA and nVidia Pascal GPUs
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 095075
DO 10.1101/095075
A1 W. B. Langdon
YR 2016
UL http://biorxiv.org/content/early/2016/12/17/095075.abstract
AB Typically BarraCUDA uses CUDA graphics cards to map DNA reads to the human genome. Previously its software source code was genetically miproved for short paired end next generation sequences. On longer, 150 base paired end noisy Cambridge Epigsnetix’s data, a Pascal GTX 1080 proc esses about 10000 strings per second, comparable with twin nVidia Tesla K40.