RT Journal Article SR Electronic T1 FinisherSC : A repeat-aware tool for upgrading de-novo assembly using long reads JF bioRxiv FD Cold Spring Harbor Laboratory SP 010215 DO 10.1101/010215 A1 Ka-Kit Lam A1 Kurt LaButti A1 Asif Khalak A1 David Tse YR 2014 UL http://biorxiv.org/content/early/2014/10/14/010215.abstract AB We introduce FinisherSC, which is a repeat-aware and scalable tool for upgrading de-novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.Availability The tool and data are available and will be maintained at http://kakitone.github.io/finishingTool/Contact dntse{at}stanford.edu