TY - JOUR T1 - Automating Morphological Profiling with Generic Deep Convolutional Networks JF - bioRxiv DO - 10.1101/085118 SP - 085118 AU - Nick Pawlowski AU - Juan C Caicedo AU - Shantanu Singh AU - Anne E Carpenter AU - Amos Storkey Y1 - 2016/01/01 UR - http://biorxiv.org/content/early/2016/11/02/085118.abstract N2 - Morphological profiling aims to create signatures of genes, chemicals and diseases from microscopy images. Current approaches use classical computer vision-based segmentation and feature extraction. Deep learning models achieve state-of-the-art performance in many computer vision tasks such as classification and segmentation. We propose to transfer activation features of generic deep convolutional networks to extract features for morphological profiling. Our approach surpasses currently used methods in terms of accuracy and processing speed. Furthermore, it enables fully automated processing of microscopy images without need for single cell identification. ER -