PT - JOURNAL ARTICLE AU - Christoph N. Schlaffner AU - Georg Pirklbauer AU - Andreas Bender AU - Jyoti S. Choudhary TI - PoGo: Jumping from Peptides to Genomic Loci AID - 10.1101/079772 DP - 2016 Jan 01 TA - bioRxiv PG - 079772 4099 - http://biorxiv.org/content/early/2016/10/07/079772.short 4100 - http://biorxiv.org/content/early/2016/10/07/079772.full AB - Current tools for visualization and integration of proteomics with other omics datasets are inadequate for large-scale studies and capture only basic sequence identity information. We developed PoGo for mapping peptides identified through mass spectrometry to a reference genome to overcome these limitations. PoGo exhibited superior performance over other tools on benchmarking with large-scale human tissue and cancer phosphoproteome datasets. Additionally, extended functionality enables representation of single nucleotide variants, post-translational modifications and quantitative features.