PT  - JOURNAL ARTICLE
AU  - Kathleen M. Fisch
AU  - Tobias Meissner
AU  - Louis Gioia
AU  - Jean-Christophe Ducom
AU  - Tristan M. Carland
AU  - Salvatore Loguercio
AU  - Andrew I. Su
TI  - Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis
AID  - 10.1101/008383
DP  - 2014 Jan 01
TA  - bioRxiv
PG  - 008383
4099  - http://biorxiv.org/content/early/2014/08/23/008383.short
4100  - http://biorxiv.org/content/early/2014/08/23/008383.full
AB  - Omics Pipe (https://bitbucket.org/sulab/omics_pipe) is a computational platform that automates multi-omics data analysis pipelines on high performance compute clusters and in the cloud. It supports best practice published pipelines for RNA-seq, miRNA-seq, Exome-seq, Whole Genome sequencing, ChIP-seq analyses and automatic processing of data from The Cancer Genome Atlas. Omics Pipe provides researchers with a tool for reproducible, open source and extensible next generation sequencing analysis.